Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029878

Physical Location & Seq

Genomic Coordinates Reverse (-)

85610510 .. 85612139

Gene Structure 1630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCGATCAAGTGTCTGCGTTATCTTTGGTTTCTTCAGGAAGATGCTGAAGGAGAAGACAGGATCTTATAGTCTTGTTCTTGAGAGGCCATTTTCTCCCTTTCCAATTCAACAGCTGCTTCTTATGAATGATCTTGATAATCTATTCAATAGAGGTCGAGTTCCTTTTGCAACTTGGAACAACCGTGTATTGGCTTCAAATTTGCAATCATCTGCTGGAAGCAGTGGCAATTCTGGTTTTGTCATGTTCTCCTCAAAGTTTCTAAAACCACAAGGATGGAATTCCTTGAATGGAAATGGTCATGTTCAACCAACAGTGCAGAGGAACACTACTGCCAAACCCATAAGCCAACTGGTTATAGTTTATATCCGAGTCGTGCAAATTCTTATAAAACTGCTGTTTATTTCTGCTGTTCATTGTCAGATAACAGAGCAAATATATGTCGGGTCATGTATTCAAACAGAAGATGATGTGGAGGCATTGTCAAATGCTGCAACACTATCAGCTTCAGTCAATATGCTGTCTTTCATGGTGGCAAAGGAAGATGTTCTAGAGTCTCTGCAACTTATTGGAATTACTGCTATACTAAATTTTCAAACTGGAACCGAGACACAAAACTGGGGAATCAATTCCAATTCAATAAATGAGTCATGTCAGAAGTTCGATATTCTGATGATCAACTATCCAATAAGGGATGGAGATTCTTTTGATTTGAGGAAGAAACTACCTTTTTGCGTGGGGCTATTATTACGTTTATTGAAAAAGAATCATCTGTTGAAGGAAAATCAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0006073 GO:0006091 GO:0006112 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009987 GO:0012505 GO:0015980 GO:0016020 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0030867 GO:0031090 GO:0031984 GO:0042175 GO:0042578 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046838 GO:0055114 GO:0071704 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901575 GO:2001069

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM DSPc

Protein Analysis

264

Amino Acids

29.57

Weight (kDa)

9.13

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029878)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0172111
rosa_multiflora	Rmu_ssc0000252.1_g000042

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	389
AclWI	GGATC	1 cut(s)	70
AcsI	RAATTY	4 cut(s)	199, 280, 381, 589
AcuI	CTGAAG	3 cut(s)	19, 68, 492
AfiI	CCNNNNNNNGG	1 cut(s)	190
AluBI	AGCT	2 cut(s)	115, 506
AluI	AGCT	2 cut(s)	115, 506
Alw26I	GTCTC	2 cut(s)	561, 602
AlwI	GGATC	1 cut(s)	70
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	115, 491
ApoI	RAATTY	4 cut(s)	199, 280, 381, 589
Asp700I	GAANNNNTTC	2 cut(s)	546, 628
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	102, 478
BccI	CCATC	2 cut(s)	270, 689
BclI	TGATCA	1 cut(s)	675
BcoDI	GTCTC	2 cut(s)	561, 602
BfaI	CTAG	1 cut(s)	551
BisI	GCNGC	2 cut(s)	116, 492
BlsI	GCNGC	2 cut(s)	117, 493
BmiI	GGNNCC	1 cut(s)	604
BmrI	ACTGGG	1 cut(s)	628
BmsI	GCATC	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	628
BpiI	GAAGAC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	3 cut(s)	357, 604, 623
BseGI	GGATG	2 cut(s)	281, 700
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseNI	ACTGG	3 cut(s)	357, 604, 623
BseRI	GAGGAG	1 cut(s)	241
BseXI	GCAGC	2 cut(s)	102, 478
BsgI	GTGCAG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	2 cut(s)	561, 602
BsnI	GGCC	1 cut(s)	88
Bsp143I	GATC	4 cut(s)	5, 62, 130, 675
BspANI	GGCC	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	604
BspPI	GGATC	1 cut(s)	70
BsrI	ACTGG	3 cut(s)	357, 604, 623
BssMI	GATC	4 cut(s)	5, 62, 130, 675
Bst4CI	ACNGT	2 cut(s)	185, 316
BstF5I	GGATG	2 cut(s)	281, 700
BstKTI	GATC	4 cut(s)	8, 65, 133, 678
BstMAI	GTCTC	2 cut(s)	561, 602
BstMBI	GATC	4 cut(s)	5, 62, 130, 675
BstV1I	GCAGC	2 cut(s)	102, 478
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	62
BstXI	CCANNNNNNTGG	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	281, 700
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	229, 321
CviAII	CATG	5 cut(s)	244, 302, 450, 529, 651
CviJI	RGCY	6 cut(s)	88, 115, 194, 348, 506, 742
CviKI_1	RGCY	6 cut(s)	88, 115, 194, 348, 506, 742
DpnI	GATC	4 cut(s)	7, 64, 132, 677
DpnII	GATC	4 cut(s)	5, 62, 130, 675
Eco57I	CTGAAG	3 cut(s)	19, 68, 492
EcoRI	GAATTC	1 cut(s)	280
FaeI	CATG	5 cut(s)	247, 305, 453, 532, 654
FatI	CATG	5 cut(s)	243, 301, 449, 528, 650
FbaI	TGATCA	1 cut(s)	675
Fnu4HI	GCNGC	2 cut(s)	116, 492
FokI	GGATG	2 cut(s)	288, 707
Fsp4HI	GCNGC	2 cut(s)	116, 492
FspBI	CTAG	1 cut(s)	551
GluI	GCNGC	2 cut(s)	116, 492
HaeIII	GGCC	1 cut(s)	88
Hin1II	CATG	5 cut(s)	247, 305, 453, 532, 654
HinfI	GANTC	6 cut(s)	372, 554, 624, 647, 701, 766
Hpy188I	TCNGA	4 cut(s)	371, 423, 657, 672
Hpy188III	TCNNGA	4 cut(s)	37, 80, 134, 551
HpyAV	CCTTC	2 cut(s)	43, 772
HpyCH4III	ACNGT	2 cut(s)	185, 316
HpyCH4IV	ACGT	1 cut(s)	751
HpyCH4V	TGCA	6 cut(s)	170, 205, 319, 379, 494, 562
HpySE526I	ACGT	1 cut(s)	751
Hsp92II	CATG	5 cut(s)	247, 305, 453, 532, 654
Ksp22I	TGATCA	1 cut(s)	675
Kzo9I	GATC	4 cut(s)	5, 62, 130, 675
LpnPI	CCDG	7 cut(s)	22, 45, 201, 219, 338, 585, 604
Lsp1109I	GCAGC	2 cut(s)	102, 478
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	1 cut(s)	751
MalI	GATC	4 cut(s)	7, 64, 132, 677
MboI	GATC	4 cut(s)	5, 62, 130, 675
MboII	GAAGA	6 cut(s)	25, 52, 67, 476, 554, 730
MflI	RGATCY	1 cut(s)	62
MluCI	AATT	9 cut(s)	105, 199, 229, 280, 381, 573, 589, 628, 634
MlyI	GAGTC	3 cut(s)	381, 563, 656
MnlI	CCTC	6 cut(s)	78, 146, 262, 315, 469, 708
MroXI	GAANNNNTTC	2 cut(s)	546, 628
MslI	CAYNNNNRTG	1 cut(s)	274
MspA1I	CMGCKG	1 cut(s)	115
NdeII	GATC	4 cut(s)	5, 62, 130, 675
NlaIII	CATG	5 cut(s)	247, 305, 453, 532, 654
NlaIV	GGNNCC	1 cut(s)	604
PdmI	GAANNNNTTC	2 cut(s)	546, 628
PfeI	GAWTC	3 cut(s)	624, 701, 766
PkrI	GCNGC	2 cut(s)	117, 493
PleI	GAGTC	3 cut(s)	380, 562, 655
PpsI	GAGTC	3 cut(s)	380, 562, 655
PsiI	TTATAA	1 cut(s)	389
PspN4I	GGNNCC	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	274
SatI	GCNGC	2 cut(s)	116, 492
Sau3AI	GATC	4 cut(s)	5, 62, 130, 675
SchI	GAGTC	3 cut(s)	381, 563, 656
SetI	ASST	5 cut(s)	117, 157, 508, 730, 754
SfaNI	GCATC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	9 cut(s)	105, 199, 229, 280, 381, 573, 589, 628, 634
SspMI	CTAG	1 cut(s)	551
TaaI	ACNGT	2 cut(s)	185, 316
TaiI	ACGT	1 cut(s)	754
TaqI	TCGA	2 cut(s)	157, 663
TasI	AATT	9 cut(s)	105, 199, 229, 280, 381, 573, 589, 628, 634
TfiI	GAWTC	3 cut(s)	624, 701, 766
TscAI	CASTG	2 cut(s)	229, 321
TseI	GCWGC	2 cut(s)	115, 491
TspDTI	ATGAA	3 cut(s)	140, 404, 517
TspRI	CASTG	2 cut(s)	229, 321
XapI	RAATTY	4 cut(s)	199, 280, 381, 589
XbaI	TCTAGA	1 cut(s)	550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	349
XmnI	GAANNNNTTC	2 cut(s)	546, 628
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.