Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000252.1

Orthogroup ID

OG0029878

Physical Location & Seq

Genomic Coordinates Reverse (-)

252728 .. 253081

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000252.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgctgaaggagaagacaggatattatagtcttgttcttgagaggccattttctccctttccaattcaacagctgcttcttatgaatgatcttgataatctattcaatagaggtcgagttccttttgcaacttggaacaaccgtgtattggcttcaaatttgcaatcatctgctggaagcagtggcaattctggttttgtcatgttctcctcaaagtttctaaaaccacaaggatggaattccttgaatggaaatggtcatgttcaaccaacagtgcagaggaacactactgccaaacccataagccaactggtttgttttctgtccgaagaggagcctggagatggagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0006073 GO:0006091 GO:0006112 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009987 GO:0012505 GO:0015980 GO:0016020 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0030867 GO:0031090 GO:0031984 GO:0042175 GO:0042578 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046838 GO:0055114 GO:0071704 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901575 GO:2001069

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMPK1_CBM DSPc

Protein Analysis

117

Amino Acids

13.0

Weight (kDa)

7.9

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029878)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0172111
rosa_multiflora	Rmu_ssc0000252.1_g000042

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	157, 238
AcuI	CTGAAG	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	148, 344
AgsI	TTSAA	5 cut(s)	68, 106, 156, 247, 266
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	2 cut(s)	157, 238
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	2 cut(s)	228, 338
BciT130I	CCWGG	1 cut(s)	339
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 344
Bse1I	ACTGG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	339
BseGI	GGATG	1 cut(s)	239
BseLI	CCNNNNNNNGG	2 cut(s)	148, 344
BseNI	ACTGG	1 cut(s)	315
BseRI	GAGGAG	2 cut(s)	199, 347
BseXI	GCAGC	1 cut(s)	60
BsgI	GTGCAG	1 cut(s)	296
BshFI	GGCC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	148, 344
BsnI	GGCC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	315
BssMI	GATC	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	143, 274
Bst6I	CTCTTC	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	239
BstKTI	GATC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	60
BstV2I	GAAGAC	1 cut(s)	20
BstXI	CCANNNNNNTGG	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	239
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	2 cut(s)	187, 279
CviAII	CATG	2 cut(s)	202, 260
CviJI	RGCY	5 cut(s)	46, 73, 152, 306, 337
CviKI_1	RGCY	5 cut(s)	46, 73, 152, 306, 337
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	26
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	337
FaeI	CATG	2 cut(s)	205, 263
FaiI	YATR	5 cut(s)	27, 83, 203, 261, 302
FatI	CATG	2 cut(s)	201, 259
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	74
GluI	GCNGC	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	46
Hin1II	CATG	2 cut(s)	205, 263
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	2 cut(s)	38, 92
HpyCH4III	ACNGT	2 cut(s)	143, 274
HpyCH4V	TGCA	3 cut(s)	128, 163, 277
Hsp92II	CATG	2 cut(s)	205, 263
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	5 cut(s)	3, 159, 177, 296, 324
Lsp1109I	GCAGC	1 cut(s)	60
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	25, 341
MluCI	AATT	4 cut(s)	63, 157, 187, 238
MnlI	CCTC	5 cut(s)	36, 104, 220, 273, 325
MslI	CAYNNNNRTG	1 cut(s)	232
MspA1I	CMGCKG	1 cut(s)	73
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	205, 263
NlaIV	GGNNCC	1 cut(s)	336
PkrI	GCNGC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	232
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	339
SetI	ASST	2 cut(s)	75, 115
SmiMI	CAYNNNNRTG	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	4 cut(s)	63, 157, 187, 238
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	2 cut(s)	143, 274
TaqI	TCGA	1 cut(s)	115
TasI	AATT	4 cut(s)	63, 157, 187, 238
TscAI	CASTG	2 cut(s)	187, 279
TseI	GCWGC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	187, 279
XapI	RAATTY	2 cut(s)	157, 238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.