RchiOBHm_Chr2g0175351

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029816
Physical Location & Seq
Reverse (-)
87602481 .. 87606074
3594 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
ATGGTTGCGAAGCTTGCTGACCCTGGATATGCATTTCAACTCTCTTCTTCTTTCCATTCTGCTGGTTTTGTGAATGGGAATGTTGTTCAGTTTGAGAGTGGGTACTTAGTTGAGACTGTTGTGGAAGGAACTGATATTGGAGTTGTTCCTTTCAAGATCCGCATTTCAGAGGATGGCGAACTCTTTGCTGTGGAGTCCATTAATAGCAACATTGTTCGGATTACTCCTCCGTTGTCCCAATATAGTAGGGGAAGATTGGTTGCTGGATCATTTCAGGGTTATACAGGCCATGTTGATGGAAAGCCAAGTGATGCTCGTTTCAATCATCCAAAAGGTGTAACCATGGATGATAAAGGCAATGTATATGTTGCTGATACCTTGAATCACGCCATAAGAAAAATTGGAGAAGCTGGTGTGACAACCATAGCTGGTGGAAAATCAAATATTGATGGCTACAGGGATGGACCCAGTGAAGATGCAATGTTCTCAAACGATTTTGATGTAGTATATGTCCAGCCTACTTGTTCCTTGCTTGTTGTTGATAGAGGAAATGCTGCTCTTAGGATGTTCCAGTTTTTTTCCAAAACACGGGGGAGAGCATGGTCACCCACTCAGCTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NHL

Protein Analysis

207

Amino Acids

22.41

Weight (kDa)

5.78

Isoelectric Point (pI)

15.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TEN_NHL PF25021 100 - 147 7.2e-06 Teneurin NHL domain
NHL PF01436 107 - 133 2e-06 NHL repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029816)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0175351
rosa_samantha Rh6AG278000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 160
AclWI GGATC 2 cut(s) 151, 274
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 588
AgsI TTSAA 4 cut(s) 38, 154, 322, 382
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 4 cut(s) 13, 410, 428, 616
AluI AGCT 4 cut(s) 13, 410, 428, 616
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 2 cut(s) 151, 274
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 554
AseI ATTAAT 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 464
AsuHPI GGTGA 1 cut(s) 597
AvaII GGWCC 1 cut(s) 464
BbvI GCAGC 1 cut(s) 541
BccI CCATC 4 cut(s) 167, 290, 443, 455
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 454
BisI GCNGC 1 cut(s) 555
BlsI GCNGC 1 cut(s) 556
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 464
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 1 cut(s) 24
BmrI ACTGGG 1 cut(s) 462
BmsI GCATC 2 cut(s) 301, 466
BmuI ACTGGG 1 cut(s) 462
BsaJI CCNNGG 2 cut(s) 22, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 588
Bse1I ACTGG 2 cut(s) 468, 571
Bse3DI GCAATG 2 cut(s) 364, 486
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 22, 342
BseGI GGATG 5 cut(s) 178, 325, 352, 466, 570
BseLI CCNNNNNNNGG 1 cut(s) 588
BseMI GCAATG 2 cut(s) 364, 486
BseNI ACTGG 2 cut(s) 468, 571
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 541
BshFI GGCC 1 cut(s) 288
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 588
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 1 cut(s) 288
Bsp143I GATC 2 cut(s) 156, 266
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 1 cut(s) 160
BspANI GGCC 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 466
BspPI GGATC 2 cut(s) 151, 274
BsrDI GCAATG 2 cut(s) 364, 486
BsrI ACTGG 2 cut(s) 468, 571
BssECI CCNNGG 2 cut(s) 22, 342
BssMI GATC 2 cut(s) 156, 266
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 3 cut(s) 106, 560, 612
BstDSI CCRYGG 1 cut(s) 342
BstEII GGTNACC 1 cut(s) 603
BstF5I GGATG 5 cut(s) 178, 325, 352, 466, 570
BstKTI GATC 2 cut(s) 159, 269
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 2 cut(s) 156, 266
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 24
BstPI GGTNACC 1 cut(s) 603
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 454
BstV1I GCAGC 1 cut(s) 541
BstX2I RGATCY 1 cut(s) 156
BstXI CCANNNNNNTGG 2 cut(s) 62, 296
BstYI RGATCY 1 cut(s) 156
BsuRI GGCC 1 cut(s) 288
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 5 cut(s) 178, 325, 352, 466, 570
BtsIMutI CAGTG 1 cut(s) 475
Cac8I GCNNGC 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 464
Csp6I GTAC 1 cut(s) 103
CviAII CATG 3 cut(s) 290, 343, 600
CviJI RGCY 8 cut(s) 13, 288, 304, 410, 428, 453, 517, 616
CviKI_1 RGCY 8 cut(s) 13, 288, 304, 410, 428, 453, 517, 616
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 3 cut(s) 106, 560, 612
DpnI GATC 2 cut(s) 158, 268
DpnII GATC 2 cut(s) 156, 266
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 464
Eco91I GGTNACC 1 cut(s) 603
EcoO65I GGTNACC 1 cut(s) 603
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 342
EcoT22I ATGCAT 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 3 cut(s) 293, 346, 603
FaqI GGGAC 1 cut(s) 220
FatI CATG 3 cut(s) 289, 342, 599
Fnu4HI GCNGC 1 cut(s) 555
FokI GGATG 5 cut(s) 185, 312, 359, 473, 577
Fsp4HI GCNGC 1 cut(s) 555
GluI GCNGC 1 cut(s) 555
HaeIII GGCC 1 cut(s) 288
Hin1II CATG 3 cut(s) 293, 346, 603
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 2 cut(s) 194, 382
HphI GGTGA 1 cut(s) 597
Hpy188I TCNGA 2 cut(s) 169, 219
Hpy188III TCNNGA 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 2 cut(s) 32, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 3 cut(s) 106, 560, 612
Hsp92II CATG 3 cut(s) 293, 346, 603
Kzo9I GATC 2 cut(s) 156, 266
Lsp1109I GCAGC 1 cut(s) 541
LweI GCATC 2 cut(s) 301, 466
MaeIII GTNAC 3 cut(s) 337, 415, 603
MalI GATC 2 cut(s) 158, 268
MboI GATC 2 cut(s) 156, 266
MboII GAAGA 4 cut(s) 36, 39, 264, 485
MflI RGATCY 1 cut(s) 156
MluCI AATT 1 cut(s) 399
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 3 cut(s) 163, 237, 539
Mph1103I ATGCAT 1 cut(s) 34
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 14
NcoI CCATGG 1 cut(s) 342
NdeII GATC 2 cut(s) 156, 266
NlaIII CATG 3 cut(s) 293, 346, 603
NlaIV GGNNCC 1 cut(s) 466
NmuCI GTSAC 2 cut(s) 415, 603
NsiI ATGCAT 1 cut(s) 34
PfeI GAWTC 1 cut(s) 382
PkrI GCNGC 1 cut(s) 556
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PshBI ATTAAT 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 22
PspEI GGTNACC 1 cut(s) 603
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 1 cut(s) 464
PsuI RGATCY 1 cut(s) 156
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 1 cut(s) 555
Sau3AI GATC 2 cut(s) 156, 266
Sau96I GGNCC 1 cut(s) 464
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 24
SetI ASST 6 cut(s) 15, 337, 380, 412, 430, 618
SfaNI GCATC 2 cut(s) 301, 466
SfcI CTRYAG 1 cut(s) 454
SinI GGWCC 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 1 cut(s) 399
SsiI CCGC 1 cut(s) 160
SspI AATATT 1 cut(s) 445
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 118
TasI AATT 1 cut(s) 399
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 2 cut(s) 415, 603
TseI GCWGC 1 cut(s) 554
Tsp45I GTSAC 2 cut(s) 415, 603
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 464
VspI ATTAAT 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.