Rh6AG278000

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0029816
Physical Location & Seq
Forward (+)
47241180 .. 47261057
19878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG278000.1

Sequence Viewer

Length: 897 bp
ATGCATGGAGCAGTCTTCTCACCACATACACAACAGATCACGCAAAAGCAGTTATATTTCACAAAAGTAAGACTGAAACTAATCAAGACTGGAACTATTTCCTACTCCTTACAGATGAACAAGTACACAAAAGCATCGCATTTCAGAGATCTGATTTCACTACTAACCACCGGAAGCCATAAGCCGAGACCCTTAAGACCCAACAACAAAATCAGGAAGAAAAGAACGAATCCGATCTCCGTCGATGTTGGTCCCAGATTGCAATTCTGTGCTTCCCATGATCTCAAGGCACAACAAGGAGAGGCAACTATGGTTGCGAAGCTTGCTGACCCTGGATATGCATTTCAACTCTCTTCTTCTTTCCATTCTGCTGGTTTTCAAGTAACTCGAACTAGATGCAGGTTAAATTATGCGCTTCCAACAGCACATCAGTACTTAGTTGAGACTGTTGTGGAAGGAACTGATATTGGAGTTGTTCCTTTCAAGATCCGCATTTCAGAGGATGTCGAACTCTTTGCTGTGGAGTCCATTAATAGCAACATTGTTCGGATTACTCCTCCGTTGTCCCAATATAGTAGGGGAAGATTGGTTGCTGGATCATTTCAGGGTTATACAGGCCATGTTGATGGAAAGCCAAGTGATGCTCGTTTCAATCATCCAAAAGGTGTAACCATGGATGATAAAGGCAATGTATATGTTGCTGATACCTTGAATCACGCCATAAGAAAAATTGGAGAAGCTGGTGTGACAACCATAGCTGGTGGAAAATCAAATATTGATGGCTACAGGGATGGACCCAGTGAAGATGCAATGTTCTCAAACGATTTTGATGTAGTATATGTCCAGCCTACTTGTTCCTTGCTTGTTGTTGATAGAGGAAATGCTGCTCTTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NHL

Protein Analysis

298

Amino Acids

32.87

Weight (kDa)

9.62

Isoelectric Point (pI)

20.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NHL PF01436 217 - 243 3.3e-06 NHL repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029816)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0175351
rosa_samantha Rh6AG278000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 390
AciI CCGC 1 cut(s) 490
AclWI GGATC 2 cut(s) 481, 604
AfaI GTAC 2 cut(s) 125, 434
AflII CTTAAG 1 cut(s) 193
AgsI TTSAA 5 cut(s) 347, 380, 484, 652, 712
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 3 cut(s) 322, 740, 758
AluI AGCT 3 cut(s) 322, 740, 758
Alw26I GTCTC 2 cut(s) 181, 437
AlwI GGATC 2 cut(s) 481, 604
AoxI GGCC 1 cut(s) 616
ApeKI GCWGC 1 cut(s) 884
AseI ATTAAT 1 cut(s) 531
Asp700I GAANNNNTTC 1 cut(s) 97
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 2 cut(s) 251, 794
AsuHPI GGTGA 1 cut(s) 12
AvaII GGWCC 2 cut(s) 251, 794
BbsI GAAGAC 1 cut(s) 7
BbvI GCAGC 1 cut(s) 871
BccI CCATC 3 cut(s) 620, 773, 785
BcgI CGANNNNNNTGC 4 cut(s) 378, 412, 497, 531
BciT130I CCWGG 1 cut(s) 333
BcoDI GTCTC 2 cut(s) 181, 437
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 784
BfrI CTTAAG 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 390
BglII AGATCT 1 cut(s) 148
BisI GCNGC 1 cut(s) 885
BlsI GCNGC 1 cut(s) 886
BmcAI AGTACT 1 cut(s) 434
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 2 cut(s) 251, 794
BmgT120I GGNCC 2 cut(s) 251, 794
BmiI GGNNCC 2 cut(s) 253, 796
BmrFI CCNGG 1 cut(s) 333
BmrI ACTGGG 1 cut(s) 792
BmsI GCATC 4 cut(s) 143, 386, 631, 796
BmuI ACTGGG 1 cut(s) 792
BpiI GAAGAC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 2 cut(s) 331, 672
BsaWI WCCGGW 1 cut(s) 170
Bse1I ACTGG 2 cut(s) 94, 798
Bse3DI GCAATG 2 cut(s) 694, 816
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 2 cut(s) 331, 672
BseGI GGATG 4 cut(s) 508, 655, 682, 796
BseMI GCAATG 2 cut(s) 694, 816
BseNI ACTGG 2 cut(s) 94, 798
BseRI GAGGAG 1 cut(s) 546
BseXI GCAGC 1 cut(s) 871
BshFI GGCC 1 cut(s) 618
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 2 cut(s) 237, 550
BsmAI GTCTC 2 cut(s) 181, 437
BsmFI GGGAC 2 cut(s) 237, 550
BsnI GGCC 1 cut(s) 618
Bso31I GGTCTC 1 cut(s) 181
Bsp143I GATC 6 cut(s) 36, 148, 234, 280, 486, 596
Bsp19I CCATGG 1 cut(s) 672
BspACI CCGC 1 cut(s) 490
BspANI GGCC 1 cut(s) 618
BspLI GGNNCC 2 cut(s) 253, 796
BspMI ACCTGC 1 cut(s) 390
BspPI GGATC 2 cut(s) 481, 604
BspTI CTTAAG 1 cut(s) 193
BspTNI GGTCTC 1 cut(s) 181
BsrDI GCAATG 2 cut(s) 694, 816
BsrI ACTGG 2 cut(s) 94, 798
BssECI CCNNGG 2 cut(s) 331, 672
BssMI GATC 6 cut(s) 36, 148, 234, 280, 486, 596
BssT1I CCWWGG 1 cut(s) 672
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 1 cut(s) 358
BstAFI CTTAAG 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 2 cut(s) 436, 890
BstDSI CCRYGG 1 cut(s) 672
BstF5I GGATG 4 cut(s) 508, 655, 682, 796
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 6 cut(s) 39, 151, 237, 283, 489, 599
BstMAI GTCTC 2 cut(s) 181, 437
BstMBI GATC 6 cut(s) 36, 148, 234, 280, 486, 596
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 784
BstV1I GCAGC 1 cut(s) 871
BstV2I GAAGAC 1 cut(s) 7
BstX2I RGATCY 2 cut(s) 148, 486
BstXI CCANNNNNNTGG 2 cut(s) 371, 626
BstYI RGATCY 2 cut(s) 148, 486
BsuRI GGCC 1 cut(s) 618
BtgI CCRYGG 1 cut(s) 672
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 4 cut(s) 508, 655, 682, 796
BtsIMutI CAGTG 1 cut(s) 805
BveI ACCTGC 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 324
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 2 cut(s) 251, 794
Csp6I GTAC 2 cut(s) 124, 433
CviAII CATG 4 cut(s) 5, 278, 620, 673
CviJI RGCY 9 cut(s) 177, 184, 322, 618, 634, 740, 758, 783, 847
CviKI_1 RGCY 9 cut(s) 177, 184, 322, 618, 634, 740, 758, 783, 847
CviQI GTAC 2 cut(s) 124, 433
DdeI CTNAG 2 cut(s) 436, 890
DpnI GATC 6 cut(s) 38, 150, 236, 282, 488, 598
DpnII GATC 6 cut(s) 36, 148, 234, 280, 486, 596
Eam1104I CTCTTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 672
Eco31I GGTCTC 1 cut(s) 181
Eco47I GGWCC 2 cut(s) 251, 794
EcoRII CCWGG 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 672
EcoT22I ATGCAT 2 cut(s) 6, 343
ErhI CCWWGG 1 cut(s) 672
FaeI CATG 4 cut(s) 8, 281, 623, 676
FaqI GGGAC 2 cut(s) 237, 550
FatI CATG 4 cut(s) 4, 277, 619, 672
Fnu4HI GCNGC 1 cut(s) 885
FokI GGATG 4 cut(s) 515, 642, 689, 803
Fsp4HI GCNGC 1 cut(s) 885
FspBI CTAG 1 cut(s) 393
GlaI GCGC 1 cut(s) 414
GluI GCNGC 1 cut(s) 885
HaeIII GGCC 1 cut(s) 618
HapII CCGG 1 cut(s) 171
HhaI GCGC 1 cut(s) 415
Hin1II CATG 4 cut(s) 8, 281, 623, 676
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 3 cut(s) 229, 524, 712
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 5 cut(s) 146, 153, 234, 499, 549
Hpy188III TCNNGA 3 cut(s) 85, 214, 484
Hpy8I GTNNAC 1 cut(s) 126
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 449
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4V TGCA 5 cut(s) 4, 262, 341, 399, 809
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 2 cut(s) 436, 890
Hsp92II CATG 4 cut(s) 8, 281, 623, 676
HspAI GCGC 1 cut(s) 413
Kzo9I GATC 6 cut(s) 36, 148, 234, 280, 486, 596
LmnI GCTCC 1 cut(s) 8
Lsp1109I GCAGC 1 cut(s) 871
LweI GCATC 4 cut(s) 143, 386, 631, 796
MaeI CTAG 1 cut(s) 393
MaeIII GTNAC 3 cut(s) 382, 667, 745
MalI GATC 6 cut(s) 38, 150, 236, 282, 488, 598
MboI GATC 6 cut(s) 36, 148, 234, 280, 486, 596
MboII GAAGA 6 cut(s) 7, 229, 345, 348, 594, 815
MflI RGATCY 2 cut(s) 148, 486
MluCI AATT 3 cut(s) 263, 406, 729
MlyI GAGTC 1 cut(s) 533
MmeI TCCRAC 1 cut(s) 443
MnlI CCTC 4 cut(s) 295, 493, 567, 869
Mph1103I ATGCAT 2 cut(s) 6, 343
MroXI GAANNNNTTC 1 cut(s) 97
MseI TTAA 3 cut(s) 194, 404, 531
MslI CAYNNNNRTG 1 cut(s) 624
MspCI CTTAAG 1 cut(s) 193
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 323
NcoI CCATGG 1 cut(s) 672
NdeII GATC 6 cut(s) 36, 148, 234, 280, 486, 596
NlaIII CATG 4 cut(s) 8, 281, 623, 676
NlaIV GGNNCC 2 cut(s) 253, 796
NmeAIII GCCGAG 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 745
NsiI ATGCAT 2 cut(s) 6, 343
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 2 cut(s) 229, 712
PkrI GCNGC 1 cut(s) 886
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
PshBI ATTAAT 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 253, 796
PspPI GGNCC 2 cut(s) 251, 794
PsuI RGATCY 2 cut(s) 148, 486
RsaI GTAC 2 cut(s) 125, 434
RsaNI GTAC 2 cut(s) 124, 433
RseI CAYNNNNRTG 1 cut(s) 624
SaqAI TTAA 3 cut(s) 194, 404, 531
SatI GCNGC 1 cut(s) 885
Sau3AI GATC 6 cut(s) 36, 148, 234, 280, 486, 596
Sau96I GGNCC 2 cut(s) 251, 794
ScaI AGTACT 1 cut(s) 434
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 1 cut(s) 333
SetI ASST 7 cut(s) 324, 404, 667, 710, 742, 760, 896
SfaNI GCATC 4 cut(s) 143, 386, 631, 796
SfcI CTRYAG 1 cut(s) 784
SinI GGWCC 2 cut(s) 251, 794
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 2 cut(s) 193, 284
SmoI CTYRAG 2 cut(s) 193, 284
Sse9I AATT 3 cut(s) 263, 406, 729
SsiI CCGC 1 cut(s) 490
SspI AATATT 1 cut(s) 775
SspMI CTAG 1 cut(s) 393
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 1 cut(s) 448
TaqI TCGA 3 cut(s) 243, 388, 507
TasI AATT 3 cut(s) 263, 406, 729
TatI WGTACW 2 cut(s) 123, 432
TfiI GAWTC 2 cut(s) 229, 712
Tru1I TTAA 3 cut(s) 194, 404, 531
Tru9I TTAA 3 cut(s) 194, 404, 531
TscAI CASTG 1 cut(s) 805
TseFI GTSAC 1 cut(s) 745
TseI GCWGC 1 cut(s) 884
Tsp45I GTSAC 1 cut(s) 745
TspDTI ATGAA 1 cut(s) 131
TspGWI ACGGA 2 cut(s) 229, 549
TspRI CASTG 1 cut(s) 805
Vha464I CTTAAG 1 cut(s) 193
VpaK11BI GGWCC 2 cut(s) 251, 794
VspI ATTAAT 1 cut(s) 531
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 1 cut(s) 393
ZrmI AGTACT 1 cut(s) 434
Zsp2I ATGCAT 2 cut(s) 6, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.