RchiOBHm_Chr2g0175681

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0029851
Physical Location & Seq
Forward (+)
87753408 .. 87755248
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 537 bp
ATGAATAGAGCTAATAAAACACTATGCTGTTGGGAAGAAGCTGTAGCTGTGACCACTGCCATCCAAGAAGAGATATTTCTGGAAATGGGTATTGATCCAAGGTTTGGCTTATTGTGCCTGGGAAAGGTGAATATAAACTATGAAAATGATCAGGATATGATGATTCGCTTCTACAAGTTCATTGCAAGGGAAGAGATGGCCTGTGATGAAGCCGAGCTTGGTGCAGATGAGTTTGCTGAAAGGATGCAGCTAGATTCAAGAAAACAGATGCAGGAGCAGCAACTGGAGATGCTAAAGCACATGCGCAGATTTCCCCTGGATGATCAATCTGCAATCCTTGAGAAGTTGCGCCAGCCGATGGAAATTGCCGACTTTGAGGATGCTGCATCAGAATTGTCATCGGAGCAGATTCAGGAGATTGTTCGAAGGCGGGTGTCACGGGTTTATTTAACCCCAAGTATTATGCATCATTTATCCAATGTAGCTGGGTCATCCTGGCCCCTTATTCCGGTGGTGGTTGTTTGTACTTTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

20.63

Weight (kDa)

4.77

Isoelectric Point (pI)

64.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029851)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0175681
rosa_samantha Rh2CG640300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 305
AccB7I CCANNNNNTGG 2 cut(s) 104, 358
AciI CCGC 1 cut(s) 430
AclWI GGATC 1 cut(s) 89
AfaI GTAC 1 cut(s) 526
AfiI CCNNNNNNNGG 4 cut(s) 104, 124, 358, 508
AgsI TTSAA 1 cut(s) 258
AjnI CCWGG 3 cut(s) 117, 315, 494
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AluBI AGCT 6 cut(s) 11, 41, 47, 217, 250, 485
AluI AGCT 6 cut(s) 11, 41, 47, 217, 250, 485
AlwI GGATC 1 cut(s) 89
AlwNI CAGNNNCTG 1 cut(s) 283
AoxI GGCC 2 cut(s) 198, 497
ApeKI GCWGC 3 cut(s) 247, 277, 383
AspLEI GCGC 2 cut(s) 306, 351
AspS9I GGNCC 1 cut(s) 498
AsuHPI GGTGA 1 cut(s) 139
AsuII TTCGAA 1 cut(s) 424
BbvI GCAGC 3 cut(s) 259, 289, 370
BccI CCATC 3 cut(s) 68, 190, 352
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 3 cut(s) 119, 317, 496
BclI TGATCA 2 cut(s) 148, 322
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 3 cut(s) 248, 278, 384
BlsI GCNGC 3 cut(s) 249, 279, 385
Bme1390I CCNGG 3 cut(s) 119, 317, 496
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 1 cut(s) 500
BmrFI CCNGG 3 cut(s) 119, 317, 496
BmsI GCATC 6 cut(s) 234, 258, 279, 370, 395, 475
BpmI CTGGAG 1 cut(s) 305
Bpu14I TTCGAA 1 cut(s) 424
BpuEI CTTGAG 1 cut(s) 359
BsaJI CCNNGG 3 cut(s) 98, 118, 315
BsaWI WCCGGW 1 cut(s) 508
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 124, 358, 508
Bse1I ACTGG 1 cut(s) 288
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 3 cut(s) 119, 317, 496
BseDI CCNNGG 3 cut(s) 98, 118, 315
BseGI GGATG 5 cut(s) 60, 249, 325, 385, 491
BseLI CCNNNNNNNGG 4 cut(s) 104, 124, 358, 508
BseMI GCAATG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 288
BseXI GCAGC 3 cut(s) 259, 289, 370
BseYI CCCAGC 1 cut(s) 485
BsgI GTGCAG 1 cut(s) 243
BshFI GGCC 2 cut(s) 200, 499
BsiSI CCGG 1 cut(s) 509
BslI CCNNNNNNNGG 4 cut(s) 104, 124, 358, 508
BsnI GGCC 2 cut(s) 200, 499
Bsp119I TTCGAA 1 cut(s) 424
Bsp143I GATC 3 cut(s) 94, 148, 322
BspACI CCGC 1 cut(s) 430
BspANI GGCC 2 cut(s) 200, 499
BspLI GGNNCC 1 cut(s) 500
BspPI GGATC 1 cut(s) 89
BspT104I TTCGAA 1 cut(s) 424
BsrDI GCAATG 1 cut(s) 180
BsrI ACTGG 1 cut(s) 288
BssECI CCNNGG 3 cut(s) 98, 118, 315
BssMI GATC 3 cut(s) 94, 148, 322
BssT1I CCWWGG 1 cut(s) 98
Bst2UI CCWGG 3 cut(s) 119, 317, 496
Bst6I CTCTTC 2 cut(s) 63, 186
BstBI TTCGAA 1 cut(s) 424
BstC8I GCNNGC 1 cut(s) 353
BstENI CCTNNNNNAGG 1 cut(s) 122
BstF5I GGATG 5 cut(s) 60, 249, 325, 385, 491
BstHHI GCGC 2 cut(s) 306, 351
BstKTI GATC 3 cut(s) 97, 151, 325
BstMBI GATC 3 cut(s) 94, 148, 322
BstMWI GCNNNNNNNGC 2 cut(s) 114, 277
BstNI CCWGG 3 cut(s) 119, 317, 496
BstNSI RCATGY 1 cut(s) 304
BstSCI CCNGG 3 cut(s) 117, 315, 494
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 259, 289, 370
BsuRI GGCC 2 cut(s) 200, 499
BtsCI GGATG 5 cut(s) 60, 249, 325, 385, 491
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 353
CaiI CAGNNNCTG 1 cut(s) 283
CfoI GCGC 2 cut(s) 306, 351
Cfr13I GGNCC 1 cut(s) 498
Csp6I GTAC 1 cut(s) 525
CviAII CATG 1 cut(s) 301
CviQI GTAC 1 cut(s) 525
DpnI GATC 3 cut(s) 96, 150, 324
DpnII GATC 3 cut(s) 94, 148, 322
Eam1104I CTCTTC 2 cut(s) 63, 186
EarI CTCTTC 2 cut(s) 63, 186
Eco130I CCWWGG 1 cut(s) 98
EcoNI CCTNNNNNAGG 1 cut(s) 122
EcoRII CCWGG 3 cut(s) 117, 315, 494
EcoT14I CCWWGG 1 cut(s) 98
EcoT22I ATGCAT 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 1 cut(s) 304
FaiI YATR 6 cut(s) 25, 134, 141, 158, 302, 464
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 1 cut(s) 300
FauI CCCGC 1 cut(s) 423
FbaI TGATCA 2 cut(s) 148, 322
Fnu4HI GCNGC 3 cut(s) 248, 278, 384
FokI GGATG 5 cut(s) 47, 256, 332, 392, 478
Fsp4HI GCNGC 3 cut(s) 248, 278, 384
FspBI CTAG 1 cut(s) 251
FspI TGCGCA 1 cut(s) 305
GlaI GCGC 2 cut(s) 305, 350
GluI GCNGC 3 cut(s) 248, 278, 384
GsaI CCCAGC 1 cut(s) 489
GsuI CTGGAG 1 cut(s) 305
HaeIII GGCC 2 cut(s) 200, 499
HapII CCGG 1 cut(s) 509
HhaI GCGC 2 cut(s) 306, 351
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 2 cut(s) 304, 349
HinP1I GCGC 2 cut(s) 304, 349
HinfI GANTC 3 cut(s) 163, 254, 409
HpaII CCGG 1 cut(s) 509
HphI GGTGA 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 391, 403
Hpy188III TCNNGA 4 cut(s) 80, 152, 258, 413
HpyAV CCTTC 1 cut(s) 420
HpyCH4V TGCA 7 cut(s) 185, 224, 247, 271, 332, 386, 466
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 277
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 2 cut(s) 304, 349
Ksp22I TGATCA 2 cut(s) 148, 322
Kzo9I GATC 3 cut(s) 94, 148, 322
LmnI GCTCC 2 cut(s) 274, 403
Lsp1109I GCAGC 3 cut(s) 259, 289, 370
LweI GCATC 6 cut(s) 234, 258, 279, 370, 395, 475
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 49, 435
MalI GATC 3 cut(s) 96, 150, 324
MboI GATC 3 cut(s) 94, 148, 322
MboII GAAGA 3 cut(s) 47, 80, 203
MluCI AATT 2 cut(s) 363, 392
MnlI CCTC 1 cut(s) 370
Mph1103I ATGCAT 1 cut(s) 468
MseI TTAA 1 cut(s) 449
MspI CCGG 1 cut(s) 509
MspR9I CCNGG 3 cut(s) 119, 317, 496
MvaI CCWGG 3 cut(s) 119, 317, 496
MwoI GCNNNNNNNGC 2 cut(s) 114, 277
NdeII GATC 3 cut(s) 94, 148, 322
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 1 cut(s) 500
NmeAIII GCCGAG 1 cut(s) 238
NmuCI GTSAC 2 cut(s) 49, 435
NsbI TGCGCA 1 cut(s) 305
NsiI ATGCAT 1 cut(s) 468
NspI RCATGY 1 cut(s) 304
NspV TTCGAA 1 cut(s) 424
PfeI GAWTC 3 cut(s) 163, 254, 409
PflMI CCANNNNNTGG 2 cut(s) 104, 358
PkrI GCNGC 3 cut(s) 249, 279, 385
Psp6I CCWGG 3 cut(s) 117, 315, 494
PspFI CCCAGC 1 cut(s) 485
PspGI CCWGG 3 cut(s) 117, 315, 494
PspN4I GGNNCC 1 cut(s) 500
PspPI GGNCC 1 cut(s) 498
PstNI CAGNNNCTG 1 cut(s) 283
RsaI GTAC 1 cut(s) 526
RsaNI GTAC 1 cut(s) 525
SaqAI TTAA 1 cut(s) 449
SatI GCNGC 3 cut(s) 248, 278, 384
Sau3AI GATC 3 cut(s) 94, 148, 322
Sau96I GGNCC 1 cut(s) 498
ScrFI CCNGG 3 cut(s) 119, 317, 496
SetI ASST 8 cut(s) 13, 43, 49, 104, 129, 219, 252, 487
SfaNI GCATC 6 cut(s) 234, 258, 279, 370, 395, 475
SfcI CTRYAG 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 2 cut(s) 363, 392
SsiI CCGC 1 cut(s) 430
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 3 cut(s) 117, 315, 494
StyI CCWWGG 1 cut(s) 98
TaqI TCGA 1 cut(s) 424
TasI AATT 2 cut(s) 363, 392
TatI WGTACW 1 cut(s) 524
TfiI GAWTC 3 cut(s) 163, 254, 409
Tru1I TTAA 1 cut(s) 449
Tru9I TTAA 1 cut(s) 449
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 2 cut(s) 49, 435
TseI GCWGC 3 cut(s) 247, 277, 383
Tsp45I GTSAC 2 cut(s) 49, 435
TspDTI ATGAA 4 cut(s) 17, 156, 169, 222
TspRI CASTG 1 cut(s) 61
Van91I CCANNNNNTGG 2 cut(s) 104, 358
XagI CCTNNNNNAGG 1 cut(s) 122
XceI RCATGY 1 cut(s) 304
XspI CTAG 1 cut(s) 251
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.