Rh2CG640300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0029851
Physical Location & Seq
Forward (+)
81043641 .. 81046159
2519 bp
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UTR
Exon/CDS
Intron
Rh2CG640300.1

Sequence Viewer

Length: 477 bp
ATGCAGGAAGCTGTAGCTGTGACCACTGCCATCCAAGAAGAGATATTTCTGGAAATGGGTATTGATCCAAGGTTTGGCTTATCGTGCCTGGGAAAGGTGAATATAAACTATGAAAATGATCAAGATATGATGATTCGCTTCTACAAGTTCATTGCAAGGGAAGAGATGGCCTGTGATGAAGCCGAGCTTGGTGCAGATGAGTTTGCTGAAAGGATGCAGATTCAAGAAAACAGATGCAGGAGCAGATTTCCCCTGGATGATCAATCTGCAATCCTTGAGAAGTTGCGCCAGCTGATGGAAATTGCCAACTTTGAGGATGCTGCATCAGAATTGTCATCGGAGCAGATTCAGGAGATTGTTCGAAGGCAGGTGTCACAGGTTTATTTAACCCCAAGTATTATGCATCATTTATCCAATGTAGCTGGGTCATCCTGGCCCCTTATTCCGGTGGTGGTTGTTTGTACTTTGTTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

18.08

Weight (kDa)

4.47

Isoelectric Point (pI)

62.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029851)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0175681
rosa_samantha Rh2CG640300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 358
Acc36I ACCTGC 1 cut(s) 358
AccB7I CCANNNNNTGG 2 cut(s) 74, 295
AclWI GGATC 1 cut(s) 59
AfaI GTAC 1 cut(s) 463
AfiI CCNNNNNNNGG 4 cut(s) 74, 94, 295, 445
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 3 cut(s) 87, 252, 431
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AluBI AGCT 5 cut(s) 11, 17, 187, 292, 422
AluI AGCT 5 cut(s) 11, 17, 187, 292, 422
AlwI GGATC 1 cut(s) 59
AoxI GGCC 2 cut(s) 168, 434
ApeKI GCWGC 1 cut(s) 320
AspLEI GCGC 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 1 cut(s) 109
AsuII TTCGAA 1 cut(s) 361
BbvI GCAGC 1 cut(s) 307
BccI CCATC 3 cut(s) 38, 160, 289
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 3 cut(s) 89, 254, 433
BclI TGATCA 2 cut(s) 118, 259
BfmI CTRYAG 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 358
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 3 cut(s) 89, 254, 433
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 1 cut(s) 437
BmrFI CCNGG 3 cut(s) 89, 254, 433
BmsI GCATC 5 cut(s) 204, 224, 307, 332, 412
Bpu14I TTCGAA 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 296
BsaJI CCNNGG 3 cut(s) 68, 88, 252
BsaWI WCCGGW 1 cut(s) 445
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 94, 295, 445
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 3 cut(s) 89, 254, 433
BseDI CCNNGG 3 cut(s) 68, 88, 252
BseGI GGATG 5 cut(s) 30, 219, 262, 322, 428
BseLI CCNNNNNNNGG 4 cut(s) 74, 94, 295, 445
BseMI GCAATG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 307
BseYI CCCAGC 1 cut(s) 422
BsgI GTGCAG 1 cut(s) 213
BshFI GGCC 2 cut(s) 170, 436
BsiSI CCGG 1 cut(s) 446
BslI CCNNNNNNNGG 4 cut(s) 74, 94, 295, 445
BsnI GGCC 2 cut(s) 170, 436
Bsp119I TTCGAA 1 cut(s) 361
Bsp143I GATC 3 cut(s) 64, 118, 259
BspANI GGCC 2 cut(s) 170, 436
BspLI GGNNCC 1 cut(s) 437
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 1 cut(s) 59
BspT104I TTCGAA 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 150
BssECI CCNNGG 3 cut(s) 68, 88, 252
BssMI GATC 3 cut(s) 64, 118, 259
BssT1I CCWWGG 1 cut(s) 68
Bst2UI CCWGG 3 cut(s) 89, 254, 433
Bst6I CTCTTC 2 cut(s) 33, 156
BstBI TTCGAA 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 290
BstENI CCTNNNNNAGG 1 cut(s) 92
BstF5I GGATG 5 cut(s) 30, 219, 262, 322, 428
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 3 cut(s) 67, 121, 262
BstMBI GATC 3 cut(s) 64, 118, 259
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNI CCWGG 3 cut(s) 89, 254, 433
BstSCI CCNGG 3 cut(s) 87, 252, 431
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 307
BsuRI GGCC 2 cut(s) 170, 436
BtsCI GGATG 5 cut(s) 30, 219, 262, 322, 428
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 290
CfoI GCGC 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 435
Csp6I GTAC 1 cut(s) 462
CviJI RGCY 9 cut(s) 11, 17, 78, 170, 182, 187, 292, 422, 436
CviKI_1 RGCY 9 cut(s) 11, 17, 78, 170, 182, 187, 292, 422, 436
CviQI GTAC 1 cut(s) 462
DpnI GATC 3 cut(s) 66, 120, 261
DpnII GATC 3 cut(s) 64, 118, 259
Eam1104I CTCTTC 2 cut(s) 33, 156
EarI CTCTTC 2 cut(s) 33, 156
Eco130I CCWWGG 1 cut(s) 68
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoRII CCWGG 3 cut(s) 87, 252, 431
EcoT14I CCWWGG 1 cut(s) 68
EcoT22I ATGCAT 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 68
FaiI YATR 4 cut(s) 104, 111, 128, 401
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FbaI TGATCA 2 cut(s) 118, 259
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 5 cut(s) 17, 226, 269, 329, 415
Fsp4HI GCNGC 1 cut(s) 321
GlaI GCGC 1 cut(s) 287
GluI GCNGC 1 cut(s) 321
GsaI CCCAGC 1 cut(s) 426
HaeIII GGCC 2 cut(s) 170, 436
HapII CCGG 1 cut(s) 446
HhaI GCGC 1 cut(s) 288
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HinfI GANTC 3 cut(s) 133, 220, 346
HpaII CCGG 1 cut(s) 446
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 328, 340
Hpy188III TCNNGA 4 cut(s) 50, 122, 224, 350
HpyAV CCTTC 1 cut(s) 357
HpyCH4V TGCA 9 cut(s) 4, 155, 194, 217, 237, 269, 323, 403, 472
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HspAI GCGC 1 cut(s) 286
Ksp22I TGATCA 2 cut(s) 118, 259
Kzo9I GATC 3 cut(s) 64, 118, 259
LmnI GCTCC 2 cut(s) 240, 340
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 5 cut(s) 204, 224, 307, 332, 412
MaeIII GTNAC 2 cut(s) 19, 372
MalI GATC 3 cut(s) 66, 120, 261
MboI GATC 3 cut(s) 64, 118, 259
MboII GAAGA 2 cut(s) 50, 173
MluCI AATT 2 cut(s) 300, 329
MnlI CCTC 1 cut(s) 307
Mph1103I ATGCAT 1 cut(s) 405
MseI TTAA 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 292
MspI CCGG 1 cut(s) 446
MspR9I CCNGG 3 cut(s) 89, 254, 433
MvaI CCWGG 3 cut(s) 89, 254, 433
MwoI GCNNNNNNNGC 1 cut(s) 84
NdeII GATC 3 cut(s) 64, 118, 259
NlaIV GGNNCC 1 cut(s) 437
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 2 cut(s) 19, 372
NsiI ATGCAT 1 cut(s) 405
NspV TTCGAA 1 cut(s) 361
PaqCI CACCTGC 1 cut(s) 358
PfeI GAWTC 3 cut(s) 133, 220, 346
PflMI CCANNNNNTGG 2 cut(s) 74, 295
PkrI GCNGC 1 cut(s) 322
Psp6I CCWGG 3 cut(s) 87, 252, 431
PspFI CCCAGC 1 cut(s) 422
PspGI CCWGG 3 cut(s) 87, 252, 431
PspN4I GGNNCC 1 cut(s) 437
PspPI GGNCC 1 cut(s) 435
PvuII CAGCTG 1 cut(s) 292
RsaI GTAC 1 cut(s) 463
RsaNI GTAC 1 cut(s) 462
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 3 cut(s) 64, 118, 259
Sau96I GGNCC 1 cut(s) 435
ScrFI CCNGG 3 cut(s) 89, 254, 433
SetI ASST 9 cut(s) 13, 19, 74, 99, 189, 294, 372, 381, 424
SfaNI GCATC 5 cut(s) 204, 224, 307, 332, 412
SfcI CTRYAG 1 cut(s) 12
SfuI TTCGAA 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 2 cut(s) 300, 329
StyD4I CCNGG 3 cut(s) 87, 252, 431
StyI CCWWGG 1 cut(s) 68
TaqI TCGA 1 cut(s) 361
TasI AATT 2 cut(s) 300, 329
TatI WGTACW 1 cut(s) 461
TfiI GAWTC 3 cut(s) 133, 220, 346
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 2 cut(s) 19, 372
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 2 cut(s) 19, 372
TspDTI ATGAA 3 cut(s) 126, 139, 192
TspRI CASTG 1 cut(s) 31
Van91I CCANNNNNTGG 2 cut(s) 74, 295
XagI CCTNNNNNAGG 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.