isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD07G1013400.v1.1 |
| rosa_chinensis | RchiOBHm_Chr1g0316751 |
| rosa_multiflora | Rmu_sc0003008.1_g000049 |
| rosa_samantha | Rh1AG023700 Rh1DG020400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 148 |
| AclWI | GGATC | 1 cut(s) | 239 |
| AjnI | CCWGG | 2 cut(s) | 17, 79 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 149, 181 |
| AluBI | AGCT | 2 cut(s) | 134, 211 |
| AluI | AGCT | 2 cut(s) | 134, 211 |
| Alw26I | GTCTC | 1 cut(s) | 201 |
| AlwI | GGATC | 1 cut(s) | 239 |
| BccI | CCATC | 1 cut(s) | 22 |
| BciT130I | CCWGG | 2 cut(s) | 19, 81 |
| BcoDI | GTCTC | 1 cut(s) | 201 |
| BfaI | CTAG | 1 cut(s) | 294 |
| Bme1390I | CCNGG | 2 cut(s) | 19, 81 |
| BmrFI | CCNGG | 2 cut(s) | 19, 81 |
| BpmI | CTGGAG | 1 cut(s) | 40 |
| BsaI | GGTCTC | 1 cut(s) | 201 |
| BsaJI | CCNNGG | 3 cut(s) | 79, 126, 308 |
| Bse3DI | GCAATG | 1 cut(s) | 111 |
| BseBI | CCWGG | 2 cut(s) | 19, 81 |
| BseDI | CCNNGG | 3 cut(s) | 79, 126, 308 |
| BseGI | GGATG | 1 cut(s) | 14 |
| BseMI | GCAATG | 1 cut(s) | 111 |
| BsmAI | GTCTC | 1 cut(s) | 201 |
| Bso31I | GGTCTC | 1 cut(s) | 201 |
| Bsp143I | GATC | 1 cut(s) | 244 |
| BspACI | CCGC | 1 cut(s) | 148 |
| BspPI | GGATC | 1 cut(s) | 239 |
| BspTNI | GGTCTC | 1 cut(s) | 201 |
| BsrDI | GCAATG | 1 cut(s) | 111 |
| BssECI | CCNNGG | 3 cut(s) | 79, 126, 308 |
| BssMI | GATC | 1 cut(s) | 244 |
| BssT1I | CCWWGG | 2 cut(s) | 126, 308 |
| Bst2UI | CCWGG | 2 cut(s) | 19, 81 |
| Bst4CI | ACNGT | 2 cut(s) | 142, 258 |
| BstC8I | GCNNGC | 1 cut(s) | 213 |
| BstF5I | GGATG | 1 cut(s) | 14 |
| BstKTI | GATC | 1 cut(s) | 247 |
| BstMAI | GTCTC | 1 cut(s) | 201 |
| BstMBI | GATC | 1 cut(s) | 244 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 122, 131 |
| BstNI | CCWGG | 2 cut(s) | 19, 81 |
| BstSCI | CCNGG | 2 cut(s) | 17, 79 |
| BtsCI | GGATG | 1 cut(s) | 14 |
| Cac8I | GCNNGC | 1 cut(s) | 213 |
| CviAII | CATG | 2 cut(s) | 206, 274 |
| CviJI | RGCY | 6 cut(s) | 25, 125, 134, 211, 284, 297 |
| CviKI_1 | RGCY | 6 cut(s) | 25, 125, 134, 211, 284, 297 |
| DpnI | GATC | 1 cut(s) | 246 |
| DpnII | GATC | 1 cut(s) | 244 |
| Eco130I | CCWWGG | 2 cut(s) | 126, 308 |
| Eco31I | GGTCTC | 1 cut(s) | 201 |
| EcoRII | CCWGG | 2 cut(s) | 17, 79 |
| EcoT14I | CCWWGG | 2 cut(s) | 126, 308 |
| ErhI | CCWWGG | 2 cut(s) | 126, 308 |
| FaeI | CATG | 2 cut(s) | 209, 277 |
| FaiI | YATR | 4 cut(s) | 71, 108, 207, 275 |
| FatI | CATG | 2 cut(s) | 205, 273 |
| FauI | CCCGC | 1 cut(s) | 141 |
| FspBI | CTAG | 1 cut(s) | 294 |
| GsuI | CTGGAG | 1 cut(s) | 40 |
| Hin1II | CATG | 2 cut(s) | 209, 277 |
| HinfI | GANTC | 4 cut(s) | 10, 158, 269, 290 |
| Hpy188I | TCNGA | 1 cut(s) | 170 |
| Hpy188III | TCNNGA | 1 cut(s) | 226 |
| HpyAV | CCTTC | 1 cut(s) | 113 |
| HpyCH4III | ACNGT | 2 cut(s) | 142, 258 |
| HpyCH4V | TGCA | 2 cut(s) | 73, 239 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 122, 131 |
| Hsp92II | CATG | 2 cut(s) | 209, 277 |
| Kzo9I | GATC | 1 cut(s) | 244 |
| LpnPI | CCDG | 7 cut(s) | 4, 31, 66, 93, 178, 266, 312 |
| MaeI | CTAG | 1 cut(s) | 294 |
| MaeIII | GTNAC | 1 cut(s) | 276 |
| MalI | GATC | 1 cut(s) | 246 |
| MboI | GATC | 1 cut(s) | 244 |
| MlyI | GAGTC | 1 cut(s) | 263 |
| MnlI | CCTC | 3 cut(s) | 15, 38, 58 |
| MspR9I | CCNGG | 2 cut(s) | 19, 81 |
| MvaI | CCWGG | 2 cut(s) | 19, 81 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 122, 131 |
| NdeII | GATC | 1 cut(s) | 244 |
| NlaIII | CATG | 2 cut(s) | 209, 277 |
| PfeI | GAWTC | 3 cut(s) | 10, 158, 290 |
| PfoI | TCCNGGA | 1 cut(s) | 17 |
| PleI | GAGTC | 1 cut(s) | 263 |
| PpsI | GAGTC | 1 cut(s) | 263 |
| Psp6I | CCWGG | 2 cut(s) | 17, 79 |
| PspGI | CCWGG | 2 cut(s) | 17, 79 |
| Sau3AI | GATC | 1 cut(s) | 244 |
| SchI | GAGTC | 1 cut(s) | 263 |
| ScrFI | CCNGG | 2 cut(s) | 19, 81 |
| SetI | ASST | 3 cut(s) | 49, 136, 213 |
| SsiI | CCGC | 1 cut(s) | 148 |
| SspMI | CTAG | 1 cut(s) | 294 |
| StyD4I | CCNGG | 2 cut(s) | 17, 79 |
| StyI | CCWWGG | 2 cut(s) | 126, 308 |
| TaaI | ACNGT | 2 cut(s) | 142, 258 |
| TaqI | TCGA | 1 cut(s) | 288 |
| TfiI | GAWTC | 3 cut(s) | 10, 158, 290 |
| TspDTI | ATGAA | 2 cut(s) | 95, 245 |
| XspI | CTAG | 1 cut(s) | 294 |