Rmu_sc0003008.1_g000049

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003008.1
OG0021205
Physical Location & Seq
Reverse (-)
170412 .. 171456
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003008.1_g000049.1.cds

Sequence Viewer

Length: 456 bp
atgagaaggattccatcctggaggctgatagtgagtgaaaaaagaggtgtcaatgtcttgggggaggatatgcacaaccctggattttggtcaagggtttgccttcataacattgccaagttagccaaggaagctacaactgttcggcgggttttggaatctttgttcagatattttgataatggcaatctctggtctcctaaacatgagcttgctctgtctgtcttgatgaataatggaccgtcaagacaaaccttggcaacatcgatgactatcttctcagctaatgcgtacaacattgttgcccttgctccttctgctaaagcagcacttacaaatgaaacagttgatccctttctacggttagttgatgactccaagttacaggctgtcgaatctagccctgaccaaccaaggaaagtttatggatcaaaagaagatgatcagaatgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.91

Weight (kDa)

9.16

Isoelectric Point (pI)

52.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021205)

Species Orthologous Gene IDs
malus_domestica MD07G1013400.v1.1
rosa_chinensis RchiOBHm_Chr1g0316751
rosa_multiflora Rmu_sc0003008.1_g000049
rosa_samantha Rh1AG023700 Rh1DG020400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 148
AclWI GGATC 2 cut(s) 344, 436
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 360
AjnI CCWGG 2 cut(s) 17, 79
AloI GAACNNNNNNTCC 2 cut(s) 149, 181
AluBI AGCT 3 cut(s) 134, 211, 284
AluI AGCT 3 cut(s) 134, 211, 284
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 2 cut(s) 344, 436
ApeKI GCWGC 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 239
AvaII GGWCC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 338
BccI CCATC 1 cut(s) 22
BciT130I CCWGG 2 cut(s) 19, 81
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 1 cut(s) 399
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
Bme1390I CCNGG 2 cut(s) 19, 81
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmrFI CCNGG 2 cut(s) 19, 81
BpmI CTGGAG 1 cut(s) 40
Bsa29I ATCGAT 1 cut(s) 266
BsaBI GATNNNNATC 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 4 cut(s) 79, 126, 255, 413
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse3DI GCAATG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 272
BseBI CCWGG 2 cut(s) 19, 81
BseCI ATCGAT 1 cut(s) 266
BseDI CCNNGG 4 cut(s) 79, 126, 255, 413
BseGI GGATG 1 cut(s) 14
BseJI GATNNNNATC 1 cut(s) 272
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 294
BseXI GCAGC 1 cut(s) 338
BshVI ATCGAT 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 360
BsmAI GTCTC 1 cut(s) 201
BsmI GAATGC 1 cut(s) 454
Bso31I GGTCTC 1 cut(s) 201
Bsp143I GATC 3 cut(s) 349, 428, 442
BspACI CCGC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 293
BspDI ATCGAT 1 cut(s) 266
BspPI GGATC 2 cut(s) 344, 436
BspTNI GGTCTC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 111
BssECI CCNNGG 4 cut(s) 79, 126, 255, 413
BssMI GATC 3 cut(s) 349, 428, 442
BssT1I CCWWGG 3 cut(s) 126, 255, 413
Bst2UI CCWGG 2 cut(s) 19, 81
Bst4CI ACNGT 4 cut(s) 142, 243, 346, 363
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 280
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 3 cut(s) 352, 431, 445
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 3 cut(s) 349, 428, 442
BstMWI GCNNNNNNNGC 4 cut(s) 122, 131, 317, 326
BstNI CCWGG 2 cut(s) 19, 81
BstSCI CCNGG 2 cut(s) 17, 79
BstV1I GCAGC 1 cut(s) 338
Bsu15I ATCGAT 1 cut(s) 266
BsuTUI ATCGAT 1 cut(s) 266
BtsCI GGATG 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 239
ClaI ATCGAT 1 cut(s) 266
Csp6I GTAC 1 cut(s) 292
CviAII CATG 1 cut(s) 206
CviJI RGCY 7 cut(s) 25, 125, 134, 211, 284, 389, 402
CviKI_1 RGCY 7 cut(s) 25, 125, 134, 211, 284, 389, 402
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 1 cut(s) 280
DpnI GATC 3 cut(s) 351, 430, 444
DpnII GATC 3 cut(s) 349, 428, 442
Eco130I CCWWGG 3 cut(s) 126, 255, 413
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 17, 79
EcoT14I CCWWGG 3 cut(s) 126, 255, 413
ErhI CCWWGG 3 cut(s) 126, 255, 413
FaeI CATG 1 cut(s) 209
FaiI YATR 4 cut(s) 71, 108, 207, 426
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FatI CATG 1 cut(s) 205
FauI CCCGC 1 cut(s) 141
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 327
FspBI CTAG 1 cut(s) 399
GluI GCNGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 40
Hin1II CATG 1 cut(s) 209
HinfI GANTC 4 cut(s) 10, 158, 374, 395
Hpy188I TCNGA 2 cut(s) 170, 447
Hpy188III TCNNGA 2 cut(s) 226, 246
HpyAV CCTTC 2 cut(s) 113, 324
HpyCH4III ACNGT 4 cut(s) 142, 243, 346, 363
HpyCH4V TGCA 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 131, 317, 326
HpyF3I CTNAG 1 cut(s) 280
Hsp92II CATG 1 cut(s) 209
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 3 cut(s) 349, 428, 442
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 7 cut(s) 4, 31, 66, 93, 178, 371, 417
Lsp1109I GCAGC 1 cut(s) 338
MaeI CTAG 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 381
MalI GATC 3 cut(s) 351, 430, 444
MboI GATC 3 cut(s) 349, 428, 442
MboII GAAGA 2 cut(s) 268, 449
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 3 cut(s) 15, 38, 58
MspR9I CCNGG 2 cut(s) 19, 81
Mva1269I GAATGC 1 cut(s) 454
MvaI CCWGG 2 cut(s) 19, 81
MwoI GCNNNNNNNGC 4 cut(s) 122, 131, 317, 326
NdeII GATC 3 cut(s) 349, 428, 442
NlaIII CATG 1 cut(s) 209
PctI GAATGC 1 cut(s) 454
PfeI GAWTC 3 cut(s) 10, 158, 395
PfoI TCCNGGA 1 cut(s) 17
PkrI GCNGC 1 cut(s) 328
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
Psp6I CCWGG 2 cut(s) 17, 79
PspGI CCWGG 2 cut(s) 17, 79
PspPI GGNCC 1 cut(s) 239
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
SatI GCNGC 1 cut(s) 327
Sau3AI GATC 3 cut(s) 349, 428, 442
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 2 cut(s) 19, 81
SetI ASST 5 cut(s) 49, 136, 213, 257, 286
SinI GGWCC 1 cut(s) 239
SsiI CCGC 1 cut(s) 148
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 17, 79
StyI CCWWGG 3 cut(s) 126, 255, 413
TaaI ACNGT 4 cut(s) 142, 243, 346, 363
TaqI TCGA 2 cut(s) 266, 393
TfiI GAWTC 3 cut(s) 10, 158, 395
TseI GCWGC 1 cut(s) 326
TspDTI ATGAA 3 cut(s) 95, 245, 354
VpaK11BI GGWCC 1 cut(s) 239
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.