Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024518

Physical Location & Seq

Genomic Coordinates Forward (+)

4993885 .. 4994266

Gene Structure 382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAAGGACGAGGATATAAGCCACAGACTAAAGTTGTCCTCGATGATCTTGATGAGGAAGAGAAGGAACGTATGGTATTAGGCCATAGTGAAAAGTTATCAGTTGCATTTGGTCTCACCAATACCAAAAATGGGGAAACCATTCGGATTTCCAAGAATTTGAGGCAATATGAAGATTGCCACTATGTTACAAAGTTCATATCCAAGTTTACCAATAAAGAGATTCTAGTCCGAGATGTGAATCGGTTTCACCCTTTCCGTGACGGGGTTTGTTCATGCGGGGATTATTGGAAAGTGCAAACAATTATTCTTTCATTTTTGCTAGAAATTATTCTATGCACCGACGGTGCAAGTAACCCAACACTTATAAAACAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0031425 GO:0031426 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

126

Amino Acids

14.5

Weight (kDa)

8.34

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	5 - 97	8.5e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024518)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G020900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0317391
rosa_multiflora	Rmu_sc0001403.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AciI	CCGC	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	157
AfiI	CCNNNNNNNGG	2 cut(s)	132, 265
Alw26I	GTCTC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	157
Asp700I	GAANNNNTTC	2 cut(s)	141, 330
AsuHPI	GGTGA	2 cut(s)	109, 242
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	227, 323
BsaBI	GATNNNNATC	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 265
Bse8I	GATNNNNATC	1 cut(s)	240
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	132, 265
BshFI	GGCC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	132, 265
BsmAI	GTCTC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	84
Bso31I	GGTCTC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	1 cut(s)	84
BspTNI	GGTCTC	1 cut(s)	119
BssMI	GATC	1 cut(s)	46
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	1 cut(s)	54
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	84
CviAII	CATG	1 cut(s)	276
CviJI	RGCY	2 cut(s)	22, 84
CviKI_1	RGCY	2 cut(s)	22, 84
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	119
FaeI	CATG	1 cut(s)	279
FaiI	YATR	9 cut(s)	18, 74, 87, 171, 186, 200, 277, 337, 368
FatI	CATG	1 cut(s)	275
FauI	CCCGC	1 cut(s)	272
FspBI	CTAG	2 cut(s)	227, 323
HaeIII	GGCC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	279
HinfI	GANTC	2 cut(s)	223, 241
HphI	GGTGA	2 cut(s)	109, 242
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	2 cut(s)	147, 233
Hpy188III	TCNNGA	1 cut(s)	50
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	4 cut(s)	107, 298, 339, 350
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	46
MaeI	CTAG	2 cut(s)	227, 323
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	3 cut(s)	187, 260, 353
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	2 cut(s)	71, 185
MluCI	AATT	3 cut(s)	157, 303, 327
MnlI	CCTC	4 cut(s)	5, 49, 50, 156
MroXI	GAANNNNTTC	2 cut(s)	141, 330
MseI	TTAA	1 cut(s)	379
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	260
PdmI	GAANNNNTTC	2 cut(s)	141, 330
PfeI	GAWTC	2 cut(s)	223, 241
PsiI	TTATAA	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	379
Sau3AI	GATC	1 cut(s)	46
SetI	ASST	1 cut(s)	73
Sse9I	AATT	3 cut(s)	157, 303, 327
SsiI	CCGC	1 cut(s)	279
SspMI	CTAG	2 cut(s)	227, 323
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	42
TasI	AATT	3 cut(s)	157, 303, 327
TfiI	GAWTC	2 cut(s)	223, 241
Tru1I	TTAA	1 cut(s)	379
Tru9I	TTAA	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	5 cut(s)	17, 186, 187, 264, 303
TspGWI	ACGGA	1 cut(s)	248
XapI	RAATTY	1 cut(s)	157
XmnI	GAANNNNTTC	2 cut(s)	141, 330
XspI	CTAG	2 cut(s)	227, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.