RchiOBHm_Chr1g0319171

Amidohydrolase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
6855767 .. 6857586
1820 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 234 bp
ATGTTACGGCGAGGCCGATCCCCATGTCAAGTCATTGTTCGCTTGCATCAAGTAGAAGAAGAAGAGGCTCCCTGTCAAAATTTCACAGCTGCTGGTAAATATCCTTACTTTCCTGGCCAAGAACCCACTTTGCCTGGGGATATCAATTTGTTGCTTCAGGGGGAAACAAGCTCGCTGGGAGAGAACATTTCTTTGTCCGCATTAGGAAAAATTGGTGAATACAGCATGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

77

Amino Acids

8.45

Weight (kDa)

4.94

Isoelectric Point (pI)

54.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024789)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0319171 RchiOBHm_Chr2g0135531
rosa_laevigata RLG00000023655

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 198
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 140
AjnI CCWGG 2 cut(s) 112, 133
AluBI AGCT 2 cut(s) 89, 171
AluI AGCT 2 cut(s) 89, 171
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 92
AoxI GGCC 2 cut(s) 13, 115
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 227
BalI TGGCCA 1 cut(s) 117
BbvI GCAGC 1 cut(s) 76
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 2 cut(s) 114, 135
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 2 cut(s) 114, 135
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 2 cut(s) 114, 135
BmsI GCATC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 134
BseBI CCWGG 2 cut(s) 114, 135
BseDI CCNNGG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 76
BseYI CCCAGC 1 cut(s) 175
BshFI GGCC 2 cut(s) 15, 117
BsnI GGCC 2 cut(s) 15, 117
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 1 cut(s) 198
BspANI GGCC 2 cut(s) 15, 117
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 1 cut(s) 17
Bst2UI CCWGG 2 cut(s) 114, 135
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 44, 173, 227
BstKTI GATC 1 cut(s) 20
BstMBI GATC 1 cut(s) 17
BstNI CCWGG 2 cut(s) 114, 135
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 112, 133
BstV1I GCAGC 1 cut(s) 76
BsuRI GGCC 2 cut(s) 15, 117
Cac8I GCNNGC 3 cut(s) 44, 173, 227
CaiI CAGNNNCTG 1 cut(s) 92
CviAII CATG 2 cut(s) 24, 226
CviJI RGCY 5 cut(s) 15, 68, 89, 117, 171
CviKI_1 RGCY 5 cut(s) 15, 68, 89, 117, 171
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco32I GATATC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 112, 133
EcoRV GATATC 1 cut(s) 142
FaeI CATG 2 cut(s) 27, 229
FaiI YATR 3 cut(s) 25, 227, 232
FatI CATG 2 cut(s) 23, 225
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 90
GsaI CCCAGC 1 cut(s) 179
HaeIII GGCC 2 cut(s) 15, 117
Hin1II CATG 2 cut(s) 27, 229
HphI GGTGA 1 cut(s) 227
HpyCH4V TGCA 1 cut(s) 46
Hsp92II CATG 2 cut(s) 27, 229
Kzo9I GATC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 8 cut(s) 78, 85, 99, 120, 126, 143, 147, 161
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 55
MaeIII GTNAC 1 cut(s) 3
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 3 cut(s) 68, 71, 74
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 3 cut(s) 79, 145, 210
MluNI TGGCCA 1 cut(s) 117
MnlI CCTC 2 cut(s) 5, 58
Mox20I TGGCCA 1 cut(s) 117
MscI TGGCCA 1 cut(s) 117
Msp20I TGGCCA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 89
MspR9I CCNGG 2 cut(s) 114, 135
MvaI CCWGG 2 cut(s) 114, 135
NdeII GATC 1 cut(s) 17
NlaIII CATG 2 cut(s) 27, 229
NlaIV GGNNCC 1 cut(s) 69
NspI RCATGY 1 cut(s) 229
PaeI GCATGC 1 cut(s) 229
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PkrI GCNGC 1 cut(s) 91
Psp6I CCWGG 2 cut(s) 112, 133
PspFI CCCAGC 1 cut(s) 175
PspGI CCWGG 2 cut(s) 112, 133
PspN4I GGNNCC 1 cut(s) 69
PstNI CAGNNNCTG 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 89
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 114, 135
SetI ASST 2 cut(s) 91, 173
SfaNI GCATC 1 cut(s) 55
SphI GCATGC 1 cut(s) 229
Sse9I AATT 3 cut(s) 79, 145, 210
SsiI CCGC 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 112, 133
TasI AATT 3 cut(s) 79, 145, 210
TseI GCWGC 1 cut(s) 89
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.