RchiOBHm_Chr1g0320851

U3 small nucleolar ribonucleoprotein protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029694
Physical Location & Seq
Reverse (-)
8386490 .. 8387694
1205 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 342 bp
ATGTTGGGTCAGCGAACAGCAAATATTTTAAAGCATCTTTTTCCAGTGCTGAAGGCAGATACCAAACGCATAATTACTTTTTCGAATGAGCAGGACTACATTTCATTCAGGCATCATATTTATGACAAGCCTGGAGGTCCTAAATCCATTGAGCTGAAGGAGATTGGTCCGCGGTTTGAGTTGAAGCTTTTCAAGCGAAGTAACCGATCATGGCAGAAGAAAGAACAACGAGAGGAAGAGGATGAAGATAGAAGCAACCGGAAAAAGATAAATTGGGAACAAGAGGAACCCACAGGGTCAGAAACAGAGACGAGCTCCGAGCAAAACTACCCAAGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Brix

Protein Analysis

113

Amino Acids

13.55

Weight (kDa)

8.86

Isoelectric Point (pI)

72.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 4 - 65 3.7e-11 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029694)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0320851
rosa_wichuraiana Rw0G001110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 172
AciI CCGC 2 cut(s) 170, 172
AcuI CTGAAG 2 cut(s) 71, 176
AgsI TTSAA 2 cut(s) 184, 193
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 3 cut(s) 154, 187, 315
AluI AGCT 3 cut(s) 154, 187, 315
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 188
AspS9I GGNCC 2 cut(s) 137, 167
AsuII TTCGAA 1 cut(s) 83
AvaII GGWCC 2 cut(s) 137, 167
BanII GRGCYC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 2 cut(s) 137, 167
BmgT120I GGNCC 2 cut(s) 137, 167
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 2 cut(s) 43, 121
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 170, 332
BsaWI WCCGGW 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 170, 332
BseGI GGATG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 317
BsiSI CCGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 302
BsmBI CGTCTC 1 cut(s) 302
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 1 cut(s) 206
BspACI CCGC 2 cut(s) 170, 172
BspFNI CGCG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 288
BspT104I TTCGAA 1 cut(s) 83
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 170, 332
BssMI GATC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 231
BstBI TTCGAA 1 cut(s) 83
BstDSI CCRYGG 1 cut(s) 170
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 172
BstKTI GATC 1 cut(s) 209
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 1 cut(s) 206
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstUI CGCG 1 cut(s) 172
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 137, 167
Cfr42I CCGCGG 1 cut(s) 173
CviAII CATG 1 cut(s) 210
CviJI RGCY 4 cut(s) 130, 154, 187, 315
CviKI_1 RGCY 4 cut(s) 130, 154, 187, 315
DpnI GATC 1 cut(s) 208
DpnII GATC 1 cut(s) 206
DraI TTTAAA 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 317
Eco47I GGWCC 2 cut(s) 137, 167
Eco53kI GAGCTC 1 cut(s) 315
Eco57I CTGAAG 2 cut(s) 71, 176
EcoICRI GAGCTC 1 cut(s) 315
EcoO109I RGGNCCY 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 332
EcoT38I GRGCYC 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 332
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 1 cut(s) 213
FaiI YATR 4 cut(s) 71, 117, 123, 211
FatI CATG 1 cut(s) 209
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 317
GsuI CTGGAG 1 cut(s) 153
HapII CCGG 1 cut(s) 259
Hin1II CATG 1 cut(s) 213
HindIII AAGCTT 1 cut(s) 185
HpaII CCGG 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 301, 319
HpyAV CCTTC 2 cut(s) 46, 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
Hsp92II CATG 1 cut(s) 213
KspI CCGCGG 1 cut(s) 173
Kzo9I GATC 1 cut(s) 206
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 7 cut(s) 57, 77, 94, 117, 144, 272, 279
LweI GCATC 2 cut(s) 43, 121
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 208
MboI GATC 1 cut(s) 206
MboII GAAGA 3 cut(s) 229, 248, 257
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 2 cut(s) 72, 271
MnlI CCTC 4 cut(s) 128, 226, 232, 277
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeII GATC 1 cut(s) 206
NlaIII CATG 1 cut(s) 213
NlaIV GGNNCC 1 cut(s) 288
NspV TTCGAA 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 188
PpuMI RGGWCCY 1 cut(s) 137
Psp124BI GAGCTC 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 2 cut(s) 137, 167
PspPPI RGGWCCY 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 120
SacI GAGCTC 1 cut(s) 317
SacII CCGCGG 1 cut(s) 173
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 1 cut(s) 206
Sau96I GGNCC 2 cut(s) 137, 167
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 317
SetI ASST 4 cut(s) 139, 156, 189, 317
SfaNI GCATC 2 cut(s) 43, 121
Sfr303I CCGCGG 1 cut(s) 173
SfuI TTCGAA 1 cut(s) 83
SgrBI CCGCGG 1 cut(s) 173
SinI GGWCC 2 cut(s) 137, 167
SmiMI CAYNNNNRTG 1 cut(s) 120
Sse9I AATT 2 cut(s) 72, 271
SsiI CCGC 2 cut(s) 170, 172
SspI AATATT 1 cut(s) 25
SstI GAGCTC 1 cut(s) 317
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 332
TaqI TCGA 1 cut(s) 83
TasI AATT 2 cut(s) 72, 271
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 51
TspDTI ATGAA 2 cut(s) 93, 258
TspRI CASTG 1 cut(s) 51
VpaK11BI GGWCC 2 cut(s) 137, 167
XmnI GAANNNNTTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.