RchiOBHm_Chr1g0321731

Reticulon-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
9201753 .. 9202816
1064 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 168 bp
ATGGAGAAGATCTACGCCCACCACCGCTCGCTGGCTAAGAAGGTTGATACCGTCAACCCCGAGGTTGAAGAAGATAAGCCGTCTGTGCACGATTCCGTCAAGTCCAAGATTTTCAACCTCACCAGCCCGACAATCATGATTGCTTACATAAAATGGACATTATGTTAG

Protein Analysis

55

Amino Acids

6.34

Weight (kDa)

7.91

Isoelectric Point (pI)

29.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029544)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0321731
rosa_samantha Rh1AG279300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 27
AciI CCGC 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 2 cut(s) 68, 115
Alw21I GWGCWC 1 cut(s) 90
Alw44I GTGCAC 1 cut(s) 86
Ama87I CYCGRG 1 cut(s) 59
ApaLI GTGCAC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 90
BceAI ACGGC 1 cut(s) 64
BglII AGATCT 1 cut(s) 9
BmeT110I CYCGRG 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 31
BseSI GKGCMC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 1 cut(s) 25
BspHI TCATGA 1 cut(s) 135
BsrBI CCGCTC 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 29, 33
BstDEI CTNAG 1 cut(s) 36
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
Cac8I GCNNGC 2 cut(s) 29, 33
CciI TCATGA 1 cut(s) 135
CviAII CATG 1 cut(s) 136
CviJI RGCY 3 cut(s) 35, 79, 126
CviKI_1 RGCY 3 cut(s) 35, 79, 126
DdeI CTNAG 1 cut(s) 36
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 59
FaeI CATG 1 cut(s) 139
FaiI YATR 3 cut(s) 137, 149, 163
FatI CATG 1 cut(s) 135
Hin1II CATG 1 cut(s) 139
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 1 cut(s) 92
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 2 cut(s) 55, 88
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 2 cut(s) 55, 88
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 1 cut(s) 139
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 2 cut(s) 17, 136
MalI GATC 1 cut(s) 11
MbiI CCGCTC 1 cut(s) 27
MboI GATC 1 cut(s) 9
MboII GAAGA 3 cut(s) 19, 80, 83
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 90
MnlI CCTC 2 cut(s) 55, 128
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeII GATC 1 cut(s) 9
NlaIII CATG 1 cut(s) 139
PagI TCATGA 1 cut(s) 135
PfeI GAWTC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 9
Sau3AI GATC 1 cut(s) 9
SduI GDGCHC 1 cut(s) 90
SetI ASST 3 cut(s) 45, 66, 120
SsiI CCGC 1 cut(s) 25
TaaI ACNGT 1 cut(s) 52
TfiI GAWTC 1 cut(s) 92
TspGWI ACGGA 1 cut(s) 85
VneI GTGCAC 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.