Rh1AG279300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
50785335 .. 50785798
464 bp
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UTR
Exon/CDS
Intron
Rh1AG279300.1

Sequence Viewer

Length: 192 bp
ATGGAGAAGATCTACGCCCACCACCGCTCGTCATCTTCATCATCTTCTAAAGACGACAAACAGGCTAAGAATATCGACCACCCTGAGGTTGAAGAAGATAAGCTGTCTGTGCACGATTCCGTCAAGTCTAAGATTTTCAACCTCACCAGCCCGACAATCTTGATTGCTTACATAAAATGGACATTATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.19

Weight (kDa)

6.9

Isoelectric Point (pI)

60.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029544)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0321731
rosa_samantha Rh1AG279300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 27
AciI CCGC 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 2 cut(s) 92, 139
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw21I GWGCWC 1 cut(s) 114
Alw44I GTGCAC 1 cut(s) 110
ApaLI GTGCAC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 136
AxyI CCTNAGG 1 cut(s) 84
BaeGI GKGCMC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 114
BglII AGATCT 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse21I CCTNAGG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 75
BseSI GKGCMC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 76
BsrBI CCGCTC 1 cut(s) 27
BssMI GATC 1 cut(s) 9
BstDEI CTNAG 3 cut(s) 66, 84, 129
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstSLI GKGCMC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
Bsu36I CCTNAGG 1 cut(s) 84
CviJI RGCY 3 cut(s) 65, 103, 150
CviKI_1 RGCY 3 cut(s) 65, 103, 150
DdeI CTNAG 3 cut(s) 66, 84, 129
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco81I CCTNAGG 1 cut(s) 84
FaiI YATR 2 cut(s) 173, 187
HinfI GANTC 1 cut(s) 116
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 3 cut(s) 66, 84, 129
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 3 cut(s) 47, 96, 160
MalI GATC 1 cut(s) 11
MbiI CCGCTC 1 cut(s) 27
MboI GATC 1 cut(s) 9
MboII GAAGA 5 cut(s) 19, 27, 36, 104, 107
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 114
MnlI CCTC 2 cut(s) 79, 152
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeII GATC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 116
PsuI RGATCY 1 cut(s) 9
Sau3AI GATC 1 cut(s) 9
SduI GDGCHC 1 cut(s) 114
SetI ASST 3 cut(s) 90, 105, 144
SgeI CNNG 8 cut(s) 40, 74, 95, 125, 136, 159, 163, 172
SsiI CCGC 1 cut(s) 25
TaqI TCGA 1 cut(s) 75
TfiI GAWTC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 109
VneI GTGCAC 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.