Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029556

Physical Location & Seq

Genomic Coordinates Reverse (-)

15305800 .. 15309638

Gene Structure 3839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTGCAGAGCTCTTGATGAAGTTGTAGATATATCTATACCAGGTTCAAAAGACCATATCAAGGAGCAGGGTGAAATCTTAGAGGGTATTGTTGCTCGTATTGTAAGCCATGAGAGCTCAAAGCATATGGTGGAAGTCTTAAAAGATTTCCCTCCTCCTCCAATGGAAGGAGCTGGTCATGATTTGGGACCAAGCCTAAGGGAGATTTGTGCTGCAAATAGGTCGGATGAAACACAGCAAATAAAAGCTCTTCTCAAGCGTGTTGGCTCCTCTTTTTGCCCTGACCATTCAGACTGGCTTGGGGGAGCTGGTGATACCCAATCTAGAAATGCAGATAAAGCTGTGGTTTCAAAATTTTTACAATCTCACCCTGCTGATTTTTCTACCACCAAATTGCAGTTGCCTCTTTCTGATCACAAGTACAAAACCTACTTCTTGAAGCCAACAATGGGTGCTTGGATTATGCTGCCAGGAATACACCTTGGAGAGAATGTTTGCAAACCAGCTACTCGAATGTGCAAAAGATCAGTTATCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003972 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0008452 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0010646 GO:0010928 GO:0016070 GO:0016874 GO:0016886 GO:0022402 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042245 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_lig_CPD

Protein Analysis

179

Amino Acids

19.69

Weight (kDa)

7.08

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0326771
rosa_laevigata	RLG00000034307

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	353
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	3 cut(s)	61, 167, 449
AgsI	TTSAA	3 cut(s)	48, 351, 439
AjnI	CCWGG	2 cut(s)	40, 469
AluBI	AGCT	7 cut(s)	11, 117, 173, 248, 308, 341, 506
AluI	AGCT	7 cut(s)	11, 117, 173, 248, 308, 341, 506
Alw21I	GWGCWC	2 cut(s)	13, 119
ApeKI	GCWGC	2 cut(s)	212, 466
ApoI	RAATTY	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	3 cut(s)	83, 323, 359
AvaII	GGWCC	1 cut(s)	188
AxyI	CCTNAGG	1 cut(s)	197
BanII	GRGCYC	2 cut(s)	13, 119
Bbv12I	GWGCWC	2 cut(s)	13, 119
BbvI	GCAGC	2 cut(s)	199, 453
BcgI	CGANNNNNNTGC	2 cut(s)	204, 238
BciT130I	CCWGG	2 cut(s)	42, 471
BclI	TGATCA	1 cut(s)	412
BfaI	CTAG	1 cut(s)	324
BisI	GCNGC	2 cut(s)	213, 467
BlsI	GCNGC	2 cut(s)	214, 468
Bme1390I	CCNGG	2 cut(s)	42, 471
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	189, 268
BmrFI	CCNGG	2 cut(s)	42, 471
BpuEI	CTTGAG	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	481
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 167, 449
Bse1I	ACTGG	1 cut(s)	299
Bse21I	CCTNAGG	1 cut(s)	197
BseBI	CCWGG	2 cut(s)	42, 471
BseDI	CCNNGG	1 cut(s)	481
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	3 cut(s)	61, 167, 449
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	3 cut(s)	144, 147, 259
BseXI	GCAGC	2 cut(s)	199, 453
BsgI	GTGCAG	1 cut(s)	25
BsiHKAI	GWGCWC	2 cut(s)	13, 119
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	3 cut(s)	61, 167, 449
BsmFI	GGGAC	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	13, 119
Bsp143I	GATC	2 cut(s)	412, 524
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	189, 268
BspQI	GCTCTTC	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	481
BssMI	GATC	2 cut(s)	412, 524
BssT1I	CCWWGG	1 cut(s)	481
Bst2UI	CCWGG	2 cut(s)	42, 471
Bst6I	CTCTTC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	79, 197
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	2 cut(s)	415, 527
BstMBI	GATC	2 cut(s)	412, 524
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 338
BstNI	CCWGG	2 cut(s)	42, 471
BstSCI	CCNGG	2 cut(s)	40, 469
BstV1I	GCAGC	2 cut(s)	199, 453
Bsu36I	CCTNAGG	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	232
CciI	TCATGA	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	188
CsiI	ACCWGGT	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	2 cut(s)	110, 179
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	2 cut(s)	79, 197
DpnI	GATC	2 cut(s)	414, 526
DpnII	GATC	2 cut(s)	412, 524
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Ecl136II	GAGCTC	2 cut(s)	11, 117
Eco130I	CCWWGG	1 cut(s)	481
Eco24I	GRGCYC	2 cut(s)	13, 119
Eco47I	GGWCC	1 cut(s)	188
Eco53kI	GAGCTC	2 cut(s)	11, 117
Eco81I	CCTNAGG	1 cut(s)	197
EcoICRI	GAGCTC	2 cut(s)	11, 117
EcoRII	CCWGG	2 cut(s)	40, 469
EcoT14I	CCWWGG	1 cut(s)	481
EcoT38I	GRGCYC	2 cut(s)	13, 119
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	2 cut(s)	113, 182
FaiI	YATR	8 cut(s)	32, 38, 57, 111, 126, 128, 180, 464
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	2 cut(s)	109, 178
FauNDI	CATATG	1 cut(s)	126
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	213, 467
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	2 cut(s)	13, 119
Fsp4HI	GCNGC	2 cut(s)	213, 467
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	2 cut(s)	213, 467
Hin1II	CATG	2 cut(s)	113, 182
HphI	GGTGA	3 cut(s)	83, 323, 359
Hpy188I	TCNGA	3 cut(s)	226, 292, 412
Hpy188III	TCNNGA	4 cut(s)	14, 179, 324, 436
HpyAV	CCTTC	1 cut(s)	161
HpyCH4V	TGCA	6 cut(s)	6, 215, 332, 397, 498, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 338
HpyF3I	CTNAG	2 cut(s)	79, 197
Hsp92II	CATG	2 cut(s)	113, 182
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	2 cut(s)	412, 524
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	4 cut(s)	64, 170, 272, 305
Lsp1109I	GCAGC	2 cut(s)	199, 453
MabI	ACCWGGT	1 cut(s)	40
MaeI	CTAG	1 cut(s)	324
MalI	GATC	2 cut(s)	414, 526
MboI	GATC	2 cut(s)	412, 524
MboII	GAAGA	1 cut(s)	242
MhlI	GDGCHC	2 cut(s)	13, 119
MluCI	AATT	2 cut(s)	353, 392
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	6 cut(s)	76, 162, 165, 168, 280, 414
MseI	TTAA	1 cut(s)	140
MspR9I	CCNGG	2 cut(s)	42, 471
MvaI	CCWGG	2 cut(s)	42, 471
MwoI	GCNNNNNNNGC	2 cut(s)	114, 338
NdeI	CATATG	1 cut(s)	126
NdeII	GATC	2 cut(s)	412, 524
NlaIII	CATG	2 cut(s)	113, 182
NlaIV	GGNNCC	2 cut(s)	189, 268
PagI	TCATGA	1 cut(s)	178
PciSI	GCTCTTC	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	214, 468
Psp124BI	GAGCTC	2 cut(s)	13, 119
Psp6I	CCWGG	2 cut(s)	40, 469
PspGI	CCWGG	2 cut(s)	40, 469
PspN4I	GGNNCC	2 cut(s)	189, 268
PspPI	GGNCC	1 cut(s)	188
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SacI	GAGCTC	2 cut(s)	13, 119
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	2 cut(s)	213, 467
Sau3AI	GATC	2 cut(s)	412, 524
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	42, 471
SduI	GDGCHC	2 cut(s)	13, 119
SexAI	ACCWGGT	1 cut(s)	40
SinI	GGWCC	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	2 cut(s)	353, 392
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	2 cut(s)	13, 119
StyD4I	CCNGG	2 cut(s)	40, 469
StyI	CCWWGG	1 cut(s)	481
TaqI	TCGA	1 cut(s)	511
TasI	AATT	2 cut(s)	353, 392
TatI	WGTACW	1 cut(s)	420
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TseI	GCWGC	2 cut(s)	212, 466
TspDTI	ATGAA	2 cut(s)	33, 243
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	353
XbaI	TCTAGA	1 cut(s)	323
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.