Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0029556

Physical Location & Seq

Genomic Coordinates Forward (+)

40315737 .. 40320561

Gene Structure 4825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034307

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAATCATAGTGTAAGGAAAGCAGTGACATCGTTTTTTGCTGCCTTTGATGCCTTGTGTGAAGAAGGAACTGCAACAACTGTGTGCAGAGCTCTTGATGAAGTTGCAGATATATCTATACCAGGTTCAAAAGACCATATCAAGGAGCAGGGTGAAATCTTAGAGGGTATTGTTGCTCGTATTGTAAGCCATGAGAGCTCAAAGCATATGGTGGAAGTCTTAAAAGATTTCCCTTCTCCCCCAATGGAAGGAGCTGGTCATGATTTGGGACCAAGCCTAAGGGAGATTTGTGCTGCAAATAGGTCGGATGAAACACAGCAAATAAAAGCTCTTCTCAAGGGTGTTGGCTCCTCTTTTTGCCCTGACCATTCAGACTGGCTTGGGGGAGCTGGTGATACCCAATCTAGAAATGCAGATAAAGCCGTGGTTTCAAAATTTTTACAATCTCACCCTGCTGATTTTTCTACCACCAAATTGCAGACCATTTCACCGACTATATCTTTCTGCTTAACCCCAACGGCCATCGCTAATAAGCTGATCGAGGAATTTTCACTTTGCTGGTATAACTTTGAAGGTGGCTGGGAAGCCGTTTTGAGCAGCCGGAGATGTGTTGATGACCTCGTACTTCTCGAAGTAGACCGGCGCGTGCATCGCCTCCATTTCCTACTCGAAGGTGTTCATGACGAGAGGTCCGATTCCGTCGTCGGGGATCAGGGTTACGGCACCTGGAGCTCCGTCGCCGAGTCGGAGCTTTGTTATGAGGTGGCGGACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003972 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0008452 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0010646 GO:0010928 GO:0016070 GO:0016874 GO:0016886 GO:0022402 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042245 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_lig_CPD

Protein Analysis

259

Amino Acids

28.21

Weight (kDa)

4.91

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0326771
rosa_laevigata	RLG00000034307

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	722
AccI	GTMKAC	1 cut(s)	636
AccII	CGCG	1 cut(s)	645
AciI	CCGC	1 cut(s)	767
AclWI	GGATC	1 cut(s)	717
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	2 cut(s)	434, 545
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	3 cut(s)	142, 248, 705
AgsI	TTSAA	3 cut(s)	129, 432, 572
AhdI	GACNNNNNGTC	1 cut(s)	688
AjnI	CCWGG	2 cut(s)	121, 725
AluBI	AGCT	8 cut(s)	92, 198, 254, 329, 389, 535, 732, 751
AluI	AGCT	8 cut(s)	92, 198, 254, 329, 389, 535, 732, 751
Alw21I	GWGCWC	3 cut(s)	94, 200, 734
AlwI	GGATC	1 cut(s)	717
AoxI	GGCC	1 cut(s)	519
ApeKI	GCWGC	3 cut(s)	41, 293, 597
ApoI	RAATTY	2 cut(s)	434, 545
Asp700I	GAANNNNTTC	1 cut(s)	675
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	2 cut(s)	269, 690
AsuHPI	GGTGA	4 cut(s)	164, 404, 440, 480
AvaII	GGWCC	2 cut(s)	269, 690
AxyI	CCTNAGG	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	722
BanII	GRGCYC	3 cut(s)	94, 200, 734
Bbv12I	GWGCWC	3 cut(s)	94, 200, 734
BbvI	GCAGC	3 cut(s)	28, 280, 609
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	4 cut(s)	407, 534, 572, 736
BcgI	CGANNNNNNTGC	4 cut(s)	12, 46, 285, 319
BciT130I	CCWGG	2 cut(s)	123, 727
BfaI	CTAG	1 cut(s)	405
BisI	GCNGC	3 cut(s)	42, 294, 598
BlsI	GCNGC	3 cut(s)	43, 295, 599
Bme1390I	CCNGG	2 cut(s)	123, 727
Bme18I	GGWCC	2 cut(s)	269, 690
BmeRI	GACNNNNNGTC	1 cut(s)	688
BmgT120I	GGNCC	2 cut(s)	269, 690
BmiI	GGNNCC	3 cut(s)	270, 349, 724
BmrFI	CCNGG	2 cut(s)	123, 727
BmsI	GCATC	2 cut(s)	40, 658
BpmI	CTGGAG	1 cut(s)	748
BpuEI	CTTGAG	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 248, 705
Bse118I	RCCGGY	1 cut(s)	639
Bse1I	ACTGG	1 cut(s)	380
Bse21I	CCTNAGG	1 cut(s)	278
BseBI	CCWGG	2 cut(s)	123, 727
BseDI	CCNNGG	1 cut(s)	423
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	3 cut(s)	142, 248, 705
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	340
BseXI	GCAGC	3 cut(s)	28, 280, 609
BseYI	CCCAGC	1 cut(s)	579
BsgI	GTGCAG	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	645
BshFI	GGCC	1 cut(s)	521
BshNI	GGYRCC	1 cut(s)	722
BsiHKAI	GWGCWC	3 cut(s)	94, 200, 734
BsiSI	CCGG	2 cut(s)	601, 640
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	3 cut(s)	142, 248, 705
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	521
Bsp1286I	GDGCHC	3 cut(s)	94, 200, 734
Bsp143I	GATC	2 cut(s)	537, 709
BspACI	CCGC	1 cut(s)	767
BspANI	GGCC	1 cut(s)	521
BspFNI	CGCG	1 cut(s)	645
BspHI	TCATGA	2 cut(s)	259, 679
BspLI	GGNNCC	3 cut(s)	270, 349, 724
BspPI	GGATC	1 cut(s)	717
BspQI	GCTCTTC	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	722
BsrFI	RCCGGY	1 cut(s)	639
BsrI	ACTGG	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	639
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	2 cut(s)	537, 709
Bst2UI	CCWGG	2 cut(s)	123, 727
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	647
BstDEI	CTNAG	2 cut(s)	160, 278
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	2 cut(s)	540, 712
BstMBI	GATC	2 cut(s)	537, 709
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 195, 419, 651, 729
BstNI	CCWGG	2 cut(s)	123, 727
BstSCI	CCNGG	2 cut(s)	121, 725
BstUI	CGCG	1 cut(s)	645
BstV1I	GCAGC	3 cut(s)	28, 280, 609
Bsu36I	CCTNAGG	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	521
BtgI	CCRYGG	1 cut(s)	423
BtgZI	GCGATG	2 cut(s)	508, 635
BtsCI	GGATG	1 cut(s)	313
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	647
CciI	TCATGA	2 cut(s)	259, 679
CfoI	GCGC	1 cut(s)	645
Cfr10I	RCCGGY	1 cut(s)	639
Cfr13I	GGNCC	2 cut(s)	269, 690
CsiI	ACCWGGT	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	623
CviAII	CATG	3 cut(s)	191, 260, 680
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	2 cut(s)	160, 278
DpnI	GATC	2 cut(s)	539, 711
DpnII	GATC	2 cut(s)	537, 709
DriI	GACNNNNNGTC	1 cut(s)	688
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	336
Eam1105I	GACNNNNNGTC	1 cut(s)	688
EarI	CTCTTC	1 cut(s)	336
Ecl136II	GAGCTC	3 cut(s)	92, 198, 732
Eco24I	GRGCYC	3 cut(s)	94, 200, 734
Eco47I	GGWCC	2 cut(s)	269, 690
Eco53kI	GAGCTC	3 cut(s)	92, 198, 732
Eco81I	CCTNAGG	1 cut(s)	278
EcoICRI	GAGCTC	3 cut(s)	92, 198, 732
EcoRII	CCWGG	2 cut(s)	121, 725
EcoT38I	GRGCYC	3 cut(s)	94, 200, 734
FaeI	CATG	3 cut(s)	194, 263, 683
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	3 cut(s)	190, 259, 679
FauNDI	CATATG	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	3 cut(s)	42, 294, 598
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	3 cut(s)	94, 200, 734
Fsp4HI	GCNGC	3 cut(s)	42, 294, 598
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	3 cut(s)	42, 294, 598
GsaI	CCCAGC	1 cut(s)	583
GsuI	CTGGAG	1 cut(s)	748
HaeIII	GGCC	1 cut(s)	521
HapII	CCGG	2 cut(s)	601, 640
HhaI	GCGC	1 cut(s)	645
Hin1II	CATG	3 cut(s)	194, 263, 683
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HinfI	GANTC	3 cut(s)	4, 695, 743
HpaII	CCGG	2 cut(s)	601, 640
HphI	GGTGA	4 cut(s)	164, 404, 440, 480
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	4 cut(s)	307, 373, 694, 748
Hpy188III	TCNNGA	5 cut(s)	95, 260, 405, 629, 680
Hpy8I	GTNNAC	1 cut(s)	637
Hpy99I	CGWCG	3 cut(s)	704, 707, 740
HpyAV	CCTTC	5 cut(s)	59, 242, 243, 566, 665
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	7 cut(s)	74, 87, 107, 296, 413, 478, 649
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 195, 419, 651, 729
HpyF3I	CTNAG	2 cut(s)	160, 278
Hsp92II	CATG	3 cut(s)	194, 263, 683
HspAI	GCGC	1 cut(s)	643
Kzo9I	GATC	2 cut(s)	537, 709
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	7 cut(s)	145, 251, 353, 386, 729, 737, 748
Lsp1109I	GCAGC	3 cut(s)	28, 280, 609
LweI	GCATC	2 cut(s)	40, 658
MabI	ACCWGGT	1 cut(s)	121
MaeI	CTAG	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	25, 716
MalI	GATC	2 cut(s)	539, 711
MboI	GATC	2 cut(s)	537, 709
MboII	GAAGA	2 cut(s)	74, 323
MhlI	GDGCHC	3 cut(s)	94, 200, 734
MluCI	AATT	4 cut(s)	434, 473, 545, 772
MlyI	GAGTC	1 cut(s)	752
MmeI	TCCRAC	2 cut(s)	285, 726
MnlI	CCTC	7 cut(s)	157, 361, 535, 629, 665, 681, 754
MroXI	GAANNNNTTC	1 cut(s)	675
MseI	TTAA	2 cut(s)	221, 509
MspI	CCGG	2 cut(s)	601, 640
MspR9I	CCNGG	2 cut(s)	123, 727
MvaI	CCWGG	2 cut(s)	123, 727
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	5 cut(s)	50, 195, 419, 651, 729
NdeI	CATATG	1 cut(s)	207
NdeII	GATC	2 cut(s)	537, 709
NlaIII	CATG	3 cut(s)	194, 263, 683
NlaIV	GGNNCC	3 cut(s)	270, 349, 724
NmeAIII	GCCGAG	1 cut(s)	766
NmuCI	GTSAC	1 cut(s)	25
PagI	TCATGA	2 cut(s)	259, 679
PciSI	GCTCTTC	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	2 cut(s)	627, 690
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	2 cut(s)	4, 695
PkrI	GCNGC	3 cut(s)	43, 295, 599
PleI	GAGTC	1 cut(s)	751
PpsI	GAGTC	1 cut(s)	751
Psp124BI	GAGCTC	3 cut(s)	94, 200, 734
Psp6I	CCWGG	2 cut(s)	121, 725
PspFI	CCCAGC	1 cut(s)	579
PspGI	CCWGG	2 cut(s)	121, 725
PspN4I	GGNNCC	3 cut(s)	270, 349, 724
PspPI	GGNCC	2 cut(s)	269, 690
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
SacI	GAGCTC	3 cut(s)	94, 200, 734
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	221, 509
SatI	GCNGC	3 cut(s)	42, 294, 598
Sau3AI	GATC	2 cut(s)	537, 709
Sau96I	GGNCC	2 cut(s)	269, 690
SchI	GAGTC	1 cut(s)	752
ScrFI	CCNGG	2 cut(s)	123, 727
SduI	GDGCHC	3 cut(s)	94, 200, 734
SexAI	ACCWGGT	1 cut(s)	121
SfaNI	GCATC	2 cut(s)	40, 658
SinI	GGWCC	2 cut(s)	269, 690
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	4 cut(s)	434, 473, 545, 772
SsiI	CCGC	1 cut(s)	767
SspMI	CTAG	1 cut(s)	405
SstI	GAGCTC	3 cut(s)	94, 200, 734
StyD4I	CCNGG	2 cut(s)	121, 725
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	3 cut(s)	540, 630, 669
TasI	AATT	4 cut(s)	434, 473, 545, 772
TfiI	GAWTC	2 cut(s)	4, 695
Tru1I	TTAA	2 cut(s)	221, 509
Tru9I	TTAA	2 cut(s)	221, 509
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	3 cut(s)	41, 293, 597
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	4 cut(s)	17, 114, 324, 668
TspGWI	ACGGA	2 cut(s)	688, 724
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	2 cut(s)	269, 690
XapI	RAATTY	2 cut(s)	434, 545
XbaI	TCTAGA	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	636
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.