RchiOBHm_Chr1g0331241

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0022631
Physical Location & Seq
Forward (+)
21088625 .. 21089620
996 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 894 bp
ATGCCTCTAAAGTTAATTTTGTACTTGCACGCCACATTGGCCCTCTCAATCCCCATTATTAATGGAGTGGGGTTTTCAGTTTTTTTTCCCTTCTCTTTTCCTCTTTCCCCAAACCAAAGCAATTCCCAAATTCCCATCTTCTTCTCTTTCCCCTCTCACTCACTCCAACTCTCTCATGAAGCTCCAATGGAGAATCCACTCATAGCTAAGTCACCCAATTGGGTTTGTGAGAACCAAACCGTTTTGATTACTTCCCGGTCTAGCCTAGATTCTTGTACTGGTCGGTATGTTTATATACATGATGATCTTCCTTCCAAGTTCAACTCTGATTTGCTCAAGAACTGTAGGCTTCTTACTAGAGGGACTGACAAGCCCAATTTGTGTCCTTACTTTGAGAATTGGGGTTTTGGTCCTGAAATTGAAAACACTGAAGGGGTTTTAGCCAACAAGAGTTGGTTCTCCACAAACCAGTTCACTTTAGAAGTCATATTCCACAACAAGATGAAGCAGTATAAGTGTTTGACAAAAAACTCATCTCTGGCTTTAGCCATTTATGTGCCATTCTATGCTGGCCTTGATGTCAGTCTCCATTTGTGGGATTCCAATCTCACAGTGAGAGACGCTTCGGCTAGAGATCTCAATGGTTGGCTTTCGAAGAGGCCCGAATGGAAGGCGATGTGGGGGAGAAACCATTTCTTGGTTGTAGGGAGGATTTCATGGGATTTCAGGACGCAAACGGATGAGGTTTCGGATTGGGGGAGTAAACTCAGGTTCTTGCCGGAATCGATGAACATGAGTATGTTGTCAGTTGAAGGAAGCTCATGGGGAAATGACTATGCTATTCCATACCCAACAAACTTTCATCCTGCAAAGGATAGCGATGTGGTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

297

Amino Acids

33.83

Weight (kDa)

6.44

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 92 - 289 1.2e-40 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022631)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331241
rosa_samantha Rh1AG116400 Rh1AG116500 Rh1AG116600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 697
AcsI RAATTY 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 450
AfaI GTAC 2 cut(s) 23, 277
AfiI CCNNNNNNNGG 2 cut(s) 595, 697
AgsI TTSAA 4 cut(s) 322, 422, 812, 890
AluBI AGCT 3 cut(s) 182, 206, 819
AluI AGCT 3 cut(s) 182, 206, 819
Alw26I GTCTC 2 cut(s) 590, 612
AoxI GGCC 3 cut(s) 39, 571, 659
ApoI RAATTY 1 cut(s) 129
AseI ATTAAT 1 cut(s) 60
AspS9I GGNCC 3 cut(s) 40, 410, 660
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 204
AsuII TTCGAA 1 cut(s) 653
AvaII GGWCC 1 cut(s) 410
BccI CCATC 1 cut(s) 143
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 2 cut(s) 590, 612
BfaI CTAG 4 cut(s) 261, 266, 357, 630
BfmI CTRYAG 1 cut(s) 343
BglI GCCNNNNNGGC 1 cut(s) 38
BglII AGATCT 1 cut(s) 634
Bme1390I CCNGG 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 3 cut(s) 40, 410, 660
BmrFI CCNGG 1 cut(s) 256
Bpu14I TTCGAA 1 cut(s) 653
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 256
Bsa29I ATCGAT 1 cut(s) 785
BsaBI GATNNNNATC 1 cut(s) 603
Bsc4I CCNNNNNNNGG 2 cut(s) 595, 697
Bse1I ACTGG 2 cut(s) 283, 469
Bse8I GATNNNNATC 1 cut(s) 603
BseCI ATCGAT 1 cut(s) 785
BseGI GGATG 2 cut(s) 745, 862
BseJI GATNNNNATC 1 cut(s) 603
BseLI CCNNNNNNNGG 2 cut(s) 595, 697
BseMII CTCAG 1 cut(s) 781
BseNI ACTGG 2 cut(s) 283, 469
BshFI GGCC 3 cut(s) 41, 573, 661
BshVI ATCGAT 1 cut(s) 785
BsiSI CCGG 2 cut(s) 256, 779
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 2 cut(s) 595, 697
BsmAI GTCTC 2 cut(s) 590, 612
BsmBI CGTCTC 1 cut(s) 612
BsmFI GGGAC 1 cut(s) 376
BsnI GGCC 3 cut(s) 41, 573, 661
Bsp119I TTCGAA 1 cut(s) 653
Bsp143I GATC 2 cut(s) 304, 634
BspANI GGCC 3 cut(s) 41, 573, 661
BspCNI CTCAG 1 cut(s) 780
BspDI ATCGAT 1 cut(s) 785
BspHI TCATGA 1 cut(s) 175
BspT104I TTCGAA 1 cut(s) 653
BsrI ACTGG 2 cut(s) 283, 469
BssMI GATC 2 cut(s) 304, 634
Bst4CI ACNGT 3 cut(s) 241, 344, 613
Bst6I CTCTTC 1 cut(s) 650
BstBI TTCGAA 1 cut(s) 653
BstC8I GCNNGC 2 cut(s) 30, 571
BstDEI CTNAG 2 cut(s) 207, 767
BstF5I GGATG 2 cut(s) 745, 862
BstKTI GATC 2 cut(s) 307, 637
BstMAI GTCTC 2 cut(s) 590, 612
BstMBI GATC 2 cut(s) 304, 634
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 254
BstSFI CTRYAG 1 cut(s) 343
BstX2I RGATCY 1 cut(s) 634
BstYI RGATCY 1 cut(s) 634
Bsu15I ATCGAT 1 cut(s) 785
BsuRI GGCC 3 cut(s) 41, 573, 661
BsuTUI ATCGAT 1 cut(s) 785
BtgZI GCGATG 1 cut(s) 689
BtsCI GGATG 2 cut(s) 745, 862
BtsIMutI CAGTG 2 cut(s) 426, 618
Cac8I GCNNGC 2 cut(s) 30, 571
CciI TCATGA 1 cut(s) 175
Cfr13I GGNCC 3 cut(s) 40, 410, 660
ClaI ATCGAT 1 cut(s) 785
CseI GACGC 2 cut(s) 629, 739
Csp6I GTAC 2 cut(s) 22, 276
CviAII CATG 5 cut(s) 176, 299, 717, 793, 822
CviQI GTAC 2 cut(s) 22, 276
DdeI CTNAG 2 cut(s) 207, 767
DpnI GATC 2 cut(s) 306, 636
DpnII GATC 2 cut(s) 304, 634
Eam1104I CTCTTC 1 cut(s) 650
EarI CTCTTC 1 cut(s) 650
Eco47I GGWCC 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 450
Esp3I CGTCTC 1 cut(s) 612
FaeI CATG 5 cut(s) 179, 302, 720, 796, 825
FaqI GGGAC 1 cut(s) 376
FatI CATG 5 cut(s) 175, 298, 716, 792, 821
FokI GGATG 2 cut(s) 752, 849
FspBI CTAG 4 cut(s) 261, 266, 357, 630
HaeIII GGCC 3 cut(s) 41, 573, 661
HapII CCGG 2 cut(s) 256, 779
HgaI GACGC 2 cut(s) 629, 739
Hin1II CATG 5 cut(s) 179, 302, 720, 796, 825
HinfI GANTC 4 cut(s) 193, 269, 599, 782
HpaII CCGG 2 cut(s) 256, 779
HphI GGTGA 1 cut(s) 204
Hpy166II GTNNAC 2 cut(s) 474, 764
Hpy188I TCNGA 2 cut(s) 328, 751
Hpy188III TCNNGA 4 cut(s) 176, 337, 413, 727
Hpy8I GTNNAC 2 cut(s) 474, 764
HpyAV CCTTC 5 cut(s) 100, 321, 425, 664, 806
HpyCH4III ACNGT 3 cut(s) 241, 344, 613
HpyCH4V TGCA 2 cut(s) 28, 869
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 2 cut(s) 207, 767
Hsp92II CATG 5 cut(s) 179, 302, 720, 796, 825
Kzo9I GATC 2 cut(s) 304, 634
LmnI GCTCC 1 cut(s) 187
MaeI CTAG 4 cut(s) 261, 266, 357, 630
MaeIII GTNAC 1 cut(s) 210
MalI GATC 2 cut(s) 306, 636
MboI GATC 2 cut(s) 304, 634
MboII GAAGA 4 cut(s) 130, 133, 299, 667
MfeI CAATTG 1 cut(s) 217
MflI RGATCY 1 cut(s) 634
MluCI AATT 7 cut(s) 15, 121, 129, 217, 376, 397, 417
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 8 cut(s) 15, 53, 111, 163, 353, 651, 702, 736
MseI TTAA 2 cut(s) 14, 60
MslI CAYNNNNRTG 2 cut(s) 554, 797
MspI CCGG 2 cut(s) 256, 779
MspR9I CCNGG 1 cut(s) 256
MunI CAATTG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 38
NciI CCSGG 1 cut(s) 256
NdeII GATC 2 cut(s) 304, 634
NlaIII CATG 5 cut(s) 179, 302, 720, 796, 825
NmuCI GTSAC 1 cut(s) 210
NspV TTCGAA 1 cut(s) 653
PagI TCATGA 1 cut(s) 175
PfeI GAWTC 4 cut(s) 193, 269, 599, 782
PflMI CCANNNNNTGG 1 cut(s) 697
PshBI ATTAAT 1 cut(s) 60
PspPI GGNCC 3 cut(s) 40, 410, 660
PsuI RGATCY 1 cut(s) 634
RsaI GTAC 2 cut(s) 23, 277
RsaNI GTAC 2 cut(s) 22, 276
RseI CAYNNNNRTG 2 cut(s) 554, 797
SaqAI TTAA 2 cut(s) 14, 60
Sau3AI GATC 2 cut(s) 304, 634
Sau96I GGNCC 3 cut(s) 40, 410, 660
ScrFI CCNGG 1 cut(s) 256
SetI ASST 5 cut(s) 184, 208, 747, 773, 821
SfcI CTRYAG 1 cut(s) 343
SfuI TTCGAA 1 cut(s) 653
SinI GGWCC 1 cut(s) 410
SmiMI CAYNNNNRTG 2 cut(s) 554, 797
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 7 cut(s) 15, 121, 129, 217, 376, 397, 417
SspMI CTAG 4 cut(s) 261, 266, 357, 630
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 3 cut(s) 241, 344, 613
TaqI TCGA 2 cut(s) 653, 785
TasI AATT 7 cut(s) 15, 121, 129, 217, 376, 397, 417
TatI WGTACW 2 cut(s) 21, 275
TfiI GAWTC 4 cut(s) 193, 269, 599, 782
Tru1I TTAA 2 cut(s) 14, 60
Tru9I TTAA 2 cut(s) 14, 60
TscAI CASTG 2 cut(s) 433, 618
TseFI GTSAC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 210
TspDTI ATGAA 5 cut(s) 192, 518, 705, 803, 851
TspGWI ACGGA 1 cut(s) 752
TspRI CASTG 2 cut(s) 433, 618
Van91I CCANNNNNTGG 1 cut(s) 697
VpaK11BI GGWCC 1 cut(s) 410
VspI ATTAAT 1 cut(s) 60
XapI RAATTY 1 cut(s) 129
XspI CTAG 4 cut(s) 261, 266, 357, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.