Rh1AG116600

Xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0022631
Physical Location & Seq
Forward (+)
20056906 .. 20057654
749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG116600.1

Sequence Viewer

Length: 645 bp
ATGGAGAATCCACTCATAGCTAAGTGCTCTCAGGACCTCTGGTCGCCCAATTGGGTTTGTGAGAACCAAACCGTTTTGATTACTTCCCGGTCTAGCCCAGATTCTTGTGCTGGTCGGTATGTTTATATACATGATGATCTTCCTTCCAAGTTCAACTCTGATTTGCTCAAGAACTGTAGGCTTCTTACTAGAGGGACTGACAAGCCCAATTTGTGTCCTTACTTTGAGAATTGGGGTTTTGGTCCTGAAATTGAATACACTGAAGGGGTTTTAGCCAACAAGAGTTGGTTCTCCACAAACCAGTTCACTTTAGAAGTCATATTCCACAACAAGACGAAGCAGTATAAGTGTTTGCCAAAAAACTCAACTCTGGCTTCAGCCATTTATGTGCCATTTTATGCTGGCCTTGATGCCAGTCTCCATTTGTGGGATTCCAATCTCACGGTGAGAGACGCTTCGGCTAAAGATCTCAATGGTTGGCTTTCGAAGAGGCCCGAATGGAAAGCGATGTGGGGGAGAGACCATTTCTTGGTTGCGGGGAGGGTTTCATGGGATTTCAGGAGGCAAACGGATGAGGTTTCGGATTGGGGGAGTAAAACTCAGGTTCTTGCCGGAATCGATGAACATGAGTATGTTGTCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

214

Amino Acids

24.57

Weight (kDa)

5.96

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 36 - 200 3.2e-33 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022631)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331241
rosa_samantha Rh1AG116400 Rh1AG116500 Rh1AG116600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 529
AciI CCGC 1 cut(s) 536
AcuI CTGAAG 2 cut(s) 282, 360
AfiI CCNNNNNNNGG 2 cut(s) 427, 529
AgsI TTSAA 2 cut(s) 154, 254
AhdI GACNNNNNGTC 1 cut(s) 40
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 3 cut(s) 422, 444, 513
AoxI GGCC 2 cut(s) 403, 491
AspS9I GGNCC 3 cut(s) 34, 242, 492
AsuC2I CCSGG 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 457
AsuII TTCGAA 1 cut(s) 485
AvaII GGWCC 2 cut(s) 34, 242
Bbv12I GWGCWC 1 cut(s) 29
BcnI CCSGG 1 cut(s) 88
BcoDI GTCTC 3 cut(s) 422, 444, 513
BfaI CTAG 2 cut(s) 93, 189
BfmI CTRYAG 1 cut(s) 175
BglII AGATCT 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 88
Bme18I GGWCC 2 cut(s) 34, 242
BmeRI GACNNNNNGTC 1 cut(s) 40
BmgT120I GGNCC 3 cut(s) 34, 242, 492
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 1 cut(s) 400
BplI GAGNNNNNCTC 2 cut(s) 583, 615
Bpu14I TTCGAA 1 cut(s) 485
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 88
Bsa29I ATCGAT 1 cut(s) 618
BsaBI GATNNNNATC 1 cut(s) 435
BsaI GGTCTC 1 cut(s) 513
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 529
Bse1I ACTGG 2 cut(s) 301, 414
Bse8I GATNNNNATC 1 cut(s) 435
BseCI ATCGAT 1 cut(s) 618
BseGI GGATG 1 cut(s) 577
BseJI GATNNNNATC 1 cut(s) 435
BseLI CCNNNNNNNGG 2 cut(s) 427, 529
BseMII CTCAG 2 cut(s) 44, 614
BseNI ACTGG 2 cut(s) 301, 414
BshFI GGCC 2 cut(s) 405, 493
BshVI ATCGAT 1 cut(s) 618
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 2 cut(s) 88, 612
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 2 cut(s) 427, 529
BsmAI GTCTC 3 cut(s) 422, 444, 513
BsmBI CGTCTC 1 cut(s) 444
BsmFI GGGAC 1 cut(s) 208
BsnI GGCC 2 cut(s) 405, 493
Bso31I GGTCTC 1 cut(s) 513
Bsp119I TTCGAA 1 cut(s) 485
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 2 cut(s) 136, 466
BspACI CCGC 1 cut(s) 536
BspANI GGCC 2 cut(s) 405, 493
BspCNI CTCAG 2 cut(s) 43, 613
BspDI ATCGAT 1 cut(s) 618
BspT104I TTCGAA 1 cut(s) 485
BspTNI GGTCTC 1 cut(s) 513
BsrI ACTGG 2 cut(s) 301, 414
BssMI GATC 2 cut(s) 136, 466
Bst4CI ACNGT 3 cut(s) 73, 176, 445
Bst6I CTCTTC 1 cut(s) 482
BstBI TTCGAA 1 cut(s) 485
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 3 cut(s) 21, 30, 600
BstF5I GGATG 1 cut(s) 577
BstKTI GATC 2 cut(s) 139, 469
BstMAI GTCTC 3 cut(s) 422, 444, 513
BstMBI GATC 2 cut(s) 136, 466
BstSCI CCNGG 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
Bsu15I ATCGAT 1 cut(s) 618
BsuRI GGCC 2 cut(s) 405, 493
BsuTUI ATCGAT 1 cut(s) 618
BtgZI GCGATG 1 cut(s) 521
BtsCI GGATG 1 cut(s) 577
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 403
Cfr13I GGNCC 3 cut(s) 34, 242, 492
ClaI ATCGAT 1 cut(s) 618
CseI GACGC 1 cut(s) 461
CviAII CATG 3 cut(s) 131, 549, 626
DdeI CTNAG 3 cut(s) 21, 30, 600
DpnI GATC 2 cut(s) 138, 468
DpnII GATC 2 cut(s) 136, 466
DriI GACNNNNNGTC 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 482
Eam1105I GACNNNNNGTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 482
Eco31I GGTCTC 1 cut(s) 513
Eco47I GGWCC 2 cut(s) 34, 242
Eco57I CTGAAG 2 cut(s) 282, 360
EcoO109I RGGNCCY 1 cut(s) 34
Esp3I CGTCTC 1 cut(s) 444
FaeI CATG 3 cut(s) 134, 552, 629
FaqI GGGAC 1 cut(s) 208
FatI CATG 3 cut(s) 130, 548, 625
FauI CCCGC 1 cut(s) 529
FokI GGATG 1 cut(s) 584
FspBI CTAG 2 cut(s) 93, 189
HaeIII GGCC 2 cut(s) 405, 493
HapII CCGG 2 cut(s) 88, 612
HgaI GACGC 1 cut(s) 461
Hin1II CATG 3 cut(s) 134, 552, 629
HinfI GANTC 4 cut(s) 7, 101, 431, 615
HpaII CCGG 2 cut(s) 88, 612
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 2 cut(s) 160, 583
Hpy188III TCNNGA 4 cut(s) 32, 169, 245, 559
Hpy8I GTNNAC 1 cut(s) 306
HpyAV CCTTC 2 cut(s) 153, 257
HpyCH4III ACNGT 3 cut(s) 73, 176, 445
HpyF3I CTNAG 3 cut(s) 21, 30, 600
Hsp92II CATG 3 cut(s) 134, 552, 629
Kzo9I GATC 2 cut(s) 136, 466
LweI GCATC 1 cut(s) 400
MaeI CTAG 2 cut(s) 93, 189
MalI GATC 2 cut(s) 138, 468
MboI GATC 2 cut(s) 136, 466
MboII GAAGA 2 cut(s) 131, 499
MfeI CAATTG 1 cut(s) 49
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 4 cut(s) 49, 208, 229, 249
MnlI CCTC 6 cut(s) 47, 185, 483, 534, 555, 568
MslI CAYNNNNRTG 2 cut(s) 386, 630
MspI CCGG 2 cut(s) 88, 612
MspR9I CCNGG 1 cut(s) 88
MunI CAATTG 1 cut(s) 49
NciI CCSGG 1 cut(s) 88
NdeII GATC 2 cut(s) 136, 466
NlaIII CATG 3 cut(s) 134, 552, 629
NspV TTCGAA 1 cut(s) 485
PfeI GAWTC 4 cut(s) 7, 101, 431, 615
PflMI CCANNNNNTGG 1 cut(s) 529
PpuMI RGGWCCY 1 cut(s) 34
Psp5II RGGWCCY 1 cut(s) 34
PspPI GGNCC 3 cut(s) 34, 242, 492
PspPPI RGGWCCY 1 cut(s) 34
PsuI RGATCY 1 cut(s) 466
RseI CAYNNNNRTG 2 cut(s) 386, 630
Sau3AI GATC 2 cut(s) 136, 466
Sau96I GGNCC 3 cut(s) 34, 242, 492
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 1 cut(s) 29
SetI ASST 4 cut(s) 22, 39, 579, 606
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 1 cut(s) 175
SfuI TTCGAA 1 cut(s) 485
SinI GGWCC 2 cut(s) 34, 242
SmiMI CAYNNNNRTG 2 cut(s) 386, 630
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 4 cut(s) 49, 208, 229, 249
SsiI CCGC 1 cut(s) 536
SspMI CTAG 2 cut(s) 93, 189
StyD4I CCNGG 1 cut(s) 86
TaaI ACNGT 3 cut(s) 73, 176, 445
TaqI TCGA 2 cut(s) 485, 618
TasI AATT 4 cut(s) 49, 208, 229, 249
TfiI GAWTC 4 cut(s) 7, 101, 431, 615
TscAI CASTG 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 537, 636
TspGWI ACGGA 1 cut(s) 584
TspRI CASTG 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 529
VpaK11BI GGWCC 2 cut(s) 34, 242
XspI CTAG 2 cut(s) 93, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.