RchiOBHm_Chr1g0334571

ATPase domain of DNA mismatch repair MUTS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029534
Physical Location & Seq
Forward (+)
26719323 .. 26721829
2507 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 717 bp
ATGTCACTATTGGAATCTTTTTCTCAAACTGGTGCTTTGTTGACAATTGCCACAACACATCATGGTGAACTCAAAACCCTGAAATACAGCAATGATGCCTTTGAAAATGCATGTATGGAGTTTGATGAAGTGAACTTAAAGCCCACTTACAGAATTCTCTGGGGAGTACCAGGGCGTTCAAATGCAATCAATATAGCTGAAAGGTTGGGACTACCTGGTAAAGTAGTTGATAATGCCCGAGAACTGTATGGTGCAGCTAGTGCAGGGATAGATGAGGTTATAGTTGATATGGAATGGTTAAAGCAGGAGTATCAAGAGCTTTTATATGAAGCACAGAATCATCTGTTGATCTCAAGAGAGTTGCATGAGAAACTGTTGGTTGCCAAAAGGAAGATTATGGAACATGGTAATGATCAAAGATTTAGGCAAATGCGAGAAATATCTGAGGCTGCTGCAATGGCACGATCTATTCTTCACAAAAAAGCTCGAAAGCAACGCGAATCTGCAATTCAATCTCTGCAGCCTACTTTGGAGCGAAAAAGACAGCTTGCATTGGCAACAAAAGCAACTGATAATGGTGAGAATTCAACCACAAAAAGAAGGGTATCCTCTTCTGAAGATGTTAAAAAATCGCCATCAGATAAGTTTGAGCTTCCCAAGGTTGGCAATATGGTGTTTGTTTTGTTTCTTCGCTTGGAAAGAAGGCGACAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MutS_V

Protein Analysis

238

Amino Acids

27.23

Weight (kDa)

9.36

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029534)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0334571
rosa_samantha Rh1DG154000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 498
AcsI RAATTY 2 cut(s) 153, 583
AcuI CTGAAG 1 cut(s) 636
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 662
AgsI TTSAA 4 cut(s) 104, 180, 512, 588
AjnI CCWGG 2 cut(s) 169, 214
AluBI AGCT 6 cut(s) 197, 257, 319, 485, 547, 652
AluI AGCT 6 cut(s) 197, 257, 319, 485, 547, 652
Ama87I CYCGRG 1 cut(s) 237
ApeKI GCWGC 4 cut(s) 254, 449, 452, 520
ApoI RAATTY 2 cut(s) 153, 583
AsuHPI GGTGA 2 cut(s) 77, 590
AvaI CYCGRG 1 cut(s) 237
BbvI GCAGC 4 cut(s) 266, 436, 439, 532
BccI CCATC 1 cut(s) 643
BciT130I CCWGG 2 cut(s) 171, 216
BciVI GTATCC 1 cut(s) 616
BclI TGATCA 1 cut(s) 412
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 518
BfuI GTATCC 1 cut(s) 616
BisI GCNGC 4 cut(s) 255, 450, 453, 521
BlsI GCNGC 4 cut(s) 256, 451, 454, 522
Bme1390I CCNGG 2 cut(s) 171, 216
BmeT110I CYCGRG 1 cut(s) 237
BmrFI CCNGG 2 cut(s) 171, 216
BmsI GCATC 1 cut(s) 85
BpuEI CTTGAG 1 cut(s) 337
BsaJI CCNNGG 2 cut(s) 170, 657
Bsc4I CCNNNNNNNGG 1 cut(s) 662
Bse1I ACTGG 1 cut(s) 34
Bse3DI GCAATG 2 cut(s) 97, 462
BseBI CCWGG 2 cut(s) 171, 216
BseDI CCNNGG 2 cut(s) 170, 657
BseLI CCNNNNNNNGG 1 cut(s) 662
BseMI GCAATG 2 cut(s) 97, 462
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 34
BseXI GCAGC 4 cut(s) 266, 436, 439, 532
BsgI GTGCAG 2 cut(s) 273, 282
Bsh1236I CGCG 1 cut(s) 498
BsiHKCI CYCGRG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 662
BsmFI GGGAC 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 237
Bsp143I GATC 3 cut(s) 348, 412, 464
BspCNI CTCAG 1 cut(s) 436
BspFNI CGCG 1 cut(s) 498
BspMAI CTGCAG 1 cut(s) 522
BsrDI GCAATG 2 cut(s) 97, 462
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 170, 657
BssMI GATC 3 cut(s) 348, 412, 464
BssT1I CCWWGG 1 cut(s) 657
Bst2UI CCWGG 2 cut(s) 171, 216
Bst4CI ACNGT 3 cut(s) 246, 375, 711
Bst6I CTCTTC 1 cut(s) 616
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 549
BstDEI CTNAG 1 cut(s) 444
BstFNI CGCG 1 cut(s) 498
BstKTI GATC 3 cut(s) 351, 415, 467
BstMBI GATC 3 cut(s) 348, 412, 464
BstMWI GCNNNNNNNGC 3 cut(s) 260, 458, 563
BstNI CCWGG 2 cut(s) 171, 216
BstNSI RCATGY 1 cut(s) 114
BstSCI CCNGG 2 cut(s) 169, 214
BstSFI CTRYAG 1 cut(s) 518
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 4 cut(s) 266, 436, 439, 532
BsuI GTATCC 1 cut(s) 616
Cac8I GCNNGC 1 cut(s) 549
CsiI ACCWGGT 1 cut(s) 214
Csp6I GTAC 1 cut(s) 167
CviAII CATG 4 cut(s) 62, 111, 365, 404
CviJI RGCY 9 cut(s) 142, 197, 257, 319, 449, 485, 523, 547, 652
CviKI_1 RGCY 9 cut(s) 142, 197, 257, 319, 449, 485, 523, 547, 652
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 1 cut(s) 444
DpnI GATC 3 cut(s) 350, 414, 466
DpnII GATC 3 cut(s) 348, 412, 464
Eam1104I CTCTTC 1 cut(s) 616
EarI CTCTTC 1 cut(s) 616
Eco130I CCWWGG 1 cut(s) 657
Eco57I CTGAAG 1 cut(s) 636
Eco88I CYCGRG 1 cut(s) 237
EcoRI GAATTC 2 cut(s) 153, 583
EcoRII CCWGG 2 cut(s) 169, 214
EcoT14I CCWWGG 1 cut(s) 657
EcoT22I ATGCAT 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 657
FaeI CATG 4 cut(s) 65, 114, 368, 407
FaqI GGGAC 1 cut(s) 222
FatI CATG 4 cut(s) 61, 110, 364, 403
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 4 cut(s) 255, 450, 453, 521
Fsp4HI GCNGC 4 cut(s) 255, 450, 453, 521
FspBI CTAG 1 cut(s) 258
GluI GCNGC 4 cut(s) 255, 450, 453, 521
Hin1II CATG 4 cut(s) 65, 114, 368, 407
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 3 cut(s) 14, 337, 500
HphI GGTGA 2 cut(s) 77, 590
Hpy166II GTNNAC 3 cut(s) 42, 68, 133
Hpy188I TCNGA 3 cut(s) 445, 616, 640
Hpy188III TCNNGA 2 cut(s) 314, 354
Hpy8I GTNNAC 3 cut(s) 42, 68, 133
HpyAV CCTTC 2 cut(s) 594, 696
HpyCH4III ACNGT 3 cut(s) 246, 375, 711
HpyCH4V TGCA 9 cut(s) 110, 185, 254, 263, 364, 455, 506, 520, 551
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 458, 563
HpyF3I CTNAG 1 cut(s) 444
Hsp92II CATG 4 cut(s) 65, 114, 368, 407
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 3 cut(s) 348, 412, 464
LmnI GCTCC 1 cut(s) 532
LpnPI CCDG 9 cut(s) 15, 92, 145, 156, 183, 201, 228, 249, 290
Lsp1109I GCAGC 4 cut(s) 266, 436, 439, 532
LweI GCATC 1 cut(s) 85
MabI ACCWGGT 1 cut(s) 214
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 3
MalI GATC 3 cut(s) 350, 414, 466
MboI GATC 3 cut(s) 348, 412, 464
MboII GAAGA 5 cut(s) 403, 464, 603, 629, 680
MfeI CAATTG 1 cut(s) 45
MluCI AATT 4 cut(s) 45, 153, 507, 583
MnlI CCTC 3 cut(s) 268, 439, 619
Mph1103I ATGCAT 1 cut(s) 112
MseI TTAA 3 cut(s) 137, 299, 624
MslI CAYNNNNRTG 2 cut(s) 63, 408
MspR9I CCNGG 2 cut(s) 171, 216
MunI CAATTG 1 cut(s) 45
MvaI CCWGG 2 cut(s) 171, 216
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 3 cut(s) 260, 458, 563
NdeII GATC 3 cut(s) 348, 412, 464
NlaIII CATG 4 cut(s) 65, 114, 368, 407
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 1 cut(s) 114
PfeI GAWTC 3 cut(s) 14, 337, 500
PkrI GCNGC 4 cut(s) 256, 451, 454, 522
Psp6I CCWGG 2 cut(s) 169, 214
PspGI CCWGG 2 cut(s) 169, 214
PstI CTGCAG 1 cut(s) 522
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
RseI CAYNNNNRTG 2 cut(s) 63, 408
SaqAI TTAA 3 cut(s) 137, 299, 624
SatI GCNGC 4 cut(s) 255, 450, 453, 521
Sau3AI GATC 3 cut(s) 348, 412, 464
ScrFI CCNGG 2 cut(s) 171, 216
SexAI ACCWGGT 1 cut(s) 214
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 1 cut(s) 518
SmiMI CAYNNNNRTG 2 cut(s) 63, 408
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
Sse9I AATT 4 cut(s) 45, 153, 507, 583
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 169, 214
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 3 cut(s) 246, 375, 711
TaqI TCGA 1 cut(s) 487
TasI AATT 4 cut(s) 45, 153, 507, 583
TfiI GAWTC 3 cut(s) 14, 337, 500
Tru1I TTAA 3 cut(s) 137, 299, 624
Tru9I TTAA 3 cut(s) 137, 299, 624
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 4 cut(s) 254, 449, 452, 520
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 141, 342
XapI RAATTY 2 cut(s) 153, 583
XceI RCATGY 1 cut(s) 114
XspI CTAG 1 cut(s) 258
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.