Rh1DG154000

ATPase domain of DNA mismatch repair MUTS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0029534
Physical Location & Seq
Reverse (-)
32181041 .. 32192179
11139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG154000.1

Sequence Viewer

Length: 1089 bp
ATGAAACCTAGGGTTTTGGCCCGGATGCTTCGAGAAAACGGGAGCGTAGAAGATACATTATATTATAACCTAGATGGTCTTCATGTTTTATGTTCTGAGTCGGTACACATCCCTTGGTTTGATTCAGTGTTTGCTGACATTGGTGATGAACAATCCCTGTCTCAATCTCTGTCCACATTCTCGGGCCACCTAAAACATATAAGCGACATACAATTGCAGTCAACAAGTTGTTCACTCGTGCTACTAGATGAGGTCCGTGCGGGAACAAACCCCCTTGAAGGAGCAGCGCTGGGGATGTCACTATTGGAATCTTTTGCTCAAACTGGTGCTTTGTTGACAATTGCCACAACACATCATGGTGAACTCAAAACCCTGAAATACAGCAATGACGCCTTTGAAAATGCATGTATGGAGTTTGATGAAGTGAACTTAAAGCCCACTTACAGAATTCTCTGGGGAGTACCAGGGCGTTCAAATGCAATCAATATAGCTGAAAGGTTGGGACTACCTGGTAAAGTAGTTGATAATGCCCGAGAACTGTATGGTGCAGCTAGTGCAGGGATAGATGAGGTTATAGTTGATATGGAACGGTTAAAGCAGGAGTATCAAGAGCTTTTATATGAAGCACAGAATCATCTGTTGATCTCAAGAGAGTTGCATGAGAAACTGTTGGTTGCCAAAAGGAAGATTATGGAACATGGTAATGATCAAAGATTTAGGCAAATGCGAGAAATATCTGAGGCTGCTGCAATGGCACGATCTATTCTTCACAAAAAAGCTCGAAAGCAACGCGAATCTGCAATTCAATCTCTGCAGCCTACTTTGGAGCGAAAAAGACAGCTTGCATTGGCAACAAAAGCAACTGATAATGGTGAGAATTCAACCACAAAAAGAAGGGTATCCTCTTCTGAAGATGTTAAAAAATCGCCATCAGATAAGTTTGAGCTTCCCAAGGTTGGCAATATGGTGTTTGTTTCTTCGCTTGGAAAGAAGGCGACAGTTTTGAGAGTGGAGCCATCTAAGGAGGAAATTTTGGTTCAAGCTGGTAACATAAAGATGAAACTGAAACTAGGTGACATCAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MutS_V

Protein Analysis

362

Amino Acids

40.44

Weight (kDa)

8.27

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MutS_V PF00488 32 - 180 7.8e-21 MutS domain V
MSSS PF20297 319 - 360 6.8e-11 MutS2 and Smr-associated SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029534)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0334571
rosa_samantha Rh1DG154000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 66
AccII CGCG 1 cut(s) 792
AciI CCGC 1 cut(s) 260
AcsI RAATTY 3 cut(s) 447, 877, 1029
AcuI CTGAAG 1 cut(s) 930
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 2 cut(s) 105, 462
AfeI AGCGCT 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 278, 956
AgsI TTSAA 6 cut(s) 278, 398, 474, 806, 882, 1040
AjnI CCWGG 2 cut(s) 463, 508
AluBI AGCT 7 cut(s) 491, 551, 613, 779, 841, 946, 1043
AluI AGCT 7 cut(s) 491, 551, 613, 779, 841, 946, 1043
Alw26I GTCTC 1 cut(s) 165
Ama87I CYCGRG 2 cut(s) 181, 531
Aor51HI AGCGCT 1 cut(s) 288
AoxI GGCC 2 cut(s) 18, 184
ApeKI GCWGC 5 cut(s) 284, 548, 743, 746, 814
ApoI RAATTY 3 cut(s) 447, 877, 1029
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 3 cut(s) 19, 184, 253
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 4 cut(s) 155, 371, 884, 1085
AvaI CYCGRG 2 cut(s) 181, 531
AvaII GGWCC 1 cut(s) 253
AvrII CCTAGG 1 cut(s) 8
BauI CACGAG 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 71
BbvI GCAGC 5 cut(s) 296, 560, 730, 733, 826
BccI CCATC 3 cut(s) 68, 937, 1024
BciT130I CCWGG 2 cut(s) 465, 510
BciVI GTATCC 1 cut(s) 910
BclI TGATCA 1 cut(s) 706
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 5 cut(s) 9, 71, 245, 552, 1070
BfmI CTRYAG 1 cut(s) 812
BfoI RGCGCY 1 cut(s) 290
BfuI GTATCC 1 cut(s) 910
BisI GCNGC 5 cut(s) 285, 549, 744, 747, 815
BlnI CCTAGG 1 cut(s) 8
BlsI GCNGC 5 cut(s) 286, 550, 745, 748, 816
Bme1390I CCNGG 3 cut(s) 22, 465, 510
Bme18I GGWCC 1 cut(s) 253
BmeT110I CYCGRG 2 cut(s) 181, 531
BmgT120I GGNCC 3 cut(s) 19, 184, 253
BmiI GGNNCC 1 cut(s) 1014
BmrFI CCNGG 3 cut(s) 22, 465, 510
BmsI GCATC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 631
BpuMI CCSGG 1 cut(s) 22
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 4 cut(s) 8, 113, 464, 951
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 956
Bse1I ACTGG 1 cut(s) 328
Bse3DI GCAATG 2 cut(s) 391, 756
BseBI CCWGG 2 cut(s) 465, 510
BseDI CCNNGG 4 cut(s) 8, 113, 464, 951
BseGI GGATG 3 cut(s) 30, 108, 300
BseLI CCNNNNNNNGG 2 cut(s) 278, 956
BseMI GCAATG 2 cut(s) 391, 756
BseMII CTCAG 2 cut(s) 87, 729
BseNI ACTGG 1 cut(s) 328
BseXI GCAGC 5 cut(s) 296, 560, 730, 733, 826
BseYI CCCAGC 1 cut(s) 289
BsgI GTGCAG 2 cut(s) 567, 576
Bsh1236I CGCG 1 cut(s) 792
BshFI GGCC 2 cut(s) 20, 186
BsiHKCI CYCGRG 2 cut(s) 181, 531
BsiSI CCGG 1 cut(s) 22
BslFI GGGAC 1 cut(s) 516
BslI CCNNNNNNNGG 2 cut(s) 278, 956
BsmAI GTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 516
BsnI GGCC 2 cut(s) 20, 186
BsoBI CYCGRG 2 cut(s) 181, 531
Bsp143I GATC 3 cut(s) 642, 706, 758
BspACI CCGC 1 cut(s) 260
BspANI GGCC 2 cut(s) 20, 186
BspCNI CTCAG 2 cut(s) 88, 730
BspFNI CGCG 1 cut(s) 792
BspLI GGNNCC 1 cut(s) 1014
BspMAI CTGCAG 1 cut(s) 816
BsrDI GCAATG 2 cut(s) 391, 756
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 4 cut(s) 8, 113, 464, 951
BssMI GATC 3 cut(s) 642, 706, 758
BssNI GRCGYC 1 cut(s) 390
BssSI CACGAG 1 cut(s) 236
BssT1I CCWWGG 3 cut(s) 8, 113, 951
Bst2BI CACGAG 1 cut(s) 236
Bst2UI CCWGG 2 cut(s) 465, 510
Bst4CI ACNGT 4 cut(s) 540, 591, 669, 1000
Bst6I CTCTTC 1 cut(s) 910
BstACI GRCGYC 1 cut(s) 390
BstAPI GCANNNNNTGC 1 cut(s) 554
BstC8I GCNNGC 1 cut(s) 843
BstDEI CTNAG 3 cut(s) 96, 738, 1020
BstF5I GGATG 3 cut(s) 30, 108, 300
BstFNI CGCG 1 cut(s) 792
BstH2I RGCGCY 1 cut(s) 290
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 3 cut(s) 645, 709, 761
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 3 cut(s) 642, 706, 758
BstMWI GCNNNNNNNGC 3 cut(s) 554, 752, 857
BstNI CCWGG 2 cut(s) 465, 510
BstNSI RCATGY 1 cut(s) 408
BstSCI CCNGG 3 cut(s) 20, 463, 508
BstSFI CTRYAG 1 cut(s) 812
BstUI CGCG 1 cut(s) 792
BstV1I GCAGC 5 cut(s) 296, 560, 730, 733, 826
BstV2I GAAGAC 1 cut(s) 71
BsuI GTATCC 1 cut(s) 910
BsuRI GGCC 2 cut(s) 20, 186
BtsCI GGATG 3 cut(s) 30, 108, 300
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 843
CfoI GCGC 1 cut(s) 289
Cfr13I GGNCC 3 cut(s) 19, 184, 253
CseI GACGC 1 cut(s) 398
CsiI ACCWGGT 1 cut(s) 508
Csp6I GTAC 2 cut(s) 104, 461
CviAII CATG 5 cut(s) 83, 356, 405, 659, 698
CviQI GTAC 2 cut(s) 104, 461
DdeI CTNAG 3 cut(s) 96, 738, 1020
DpnI GATC 3 cut(s) 644, 708, 760
DpnII GATC 3 cut(s) 642, 706, 758
Eam1104I CTCTTC 1 cut(s) 910
EarI CTCTTC 1 cut(s) 910
Eco130I CCWWGG 3 cut(s) 8, 113, 951
Eco47I GGWCC 1 cut(s) 253
Eco47III AGCGCT 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 930
Eco88I CYCGRG 2 cut(s) 181, 531
EcoRI GAATTC 2 cut(s) 447, 877
EcoRII CCWGG 2 cut(s) 463, 508
EcoT14I CCWWGG 3 cut(s) 8, 113, 951
EcoT22I ATGCAT 1 cut(s) 406
ErhI CCWWGG 3 cut(s) 8, 113, 951
FaeI CATG 5 cut(s) 86, 359, 408, 662, 701
FaqI GGGAC 1 cut(s) 516
FatI CATG 5 cut(s) 82, 355, 404, 658, 697
FauI CCCGC 1 cut(s) 253
FbaI TGATCA 1 cut(s) 706
Fnu4HI GCNGC 5 cut(s) 285, 549, 744, 747, 815
FokI GGATG 3 cut(s) 37, 95, 307
Fsp4HI GCNGC 5 cut(s) 285, 549, 744, 747, 815
FspBI CTAG 5 cut(s) 9, 71, 245, 552, 1070
GlaI GCGC 1 cut(s) 288
GluI GCNGC 5 cut(s) 285, 549, 744, 747, 815
GsaI CCCAGC 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 290
HaeIII GGCC 2 cut(s) 20, 186
HapII CCGG 1 cut(s) 22
HgaI GACGC 1 cut(s) 398
HhaI GCGC 1 cut(s) 289
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 5 cut(s) 86, 359, 408, 662, 701
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HincII GTYRAC 2 cut(s) 222, 336
HindII GTYRAC 2 cut(s) 222, 336
HinfI GANTC 5 cut(s) 98, 122, 308, 631, 794
HpaII CCGG 1 cut(s) 22
HphI GGTGA 4 cut(s) 155, 371, 884, 1085
Hpy166II GTNNAC 7 cut(s) 106, 174, 222, 233, 336, 362, 427
Hpy188I TCNGA 4 cut(s) 97, 739, 910, 934
Hpy188III TCNNGA 4 cut(s) 32, 608, 648, 1081
Hpy8I GTNNAC 7 cut(s) 106, 174, 222, 233, 336, 362, 427
HpyAV CCTTC 3 cut(s) 272, 888, 985
HpyCH4III ACNGT 4 cut(s) 540, 591, 669, 1000
HpyF10VI GCNNNNNNNGC 3 cut(s) 554, 752, 857
HpyF3I CTNAG 3 cut(s) 96, 738, 1020
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 5 cut(s) 86, 359, 408, 662, 701
HspAI GCGC 1 cut(s) 287
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 3 cut(s) 642, 706, 758
LmnI GCTCC 4 cut(s) 42, 281, 826, 1012
Lsp1109I GCAGC 5 cut(s) 296, 560, 730, 733, 826
LweI GCATC 1 cut(s) 15
MabI ACCWGGT 1 cut(s) 508
MaeI CTAG 5 cut(s) 9, 71, 245, 552, 1070
MaeIII GTNAC 3 cut(s) 297, 1046, 1073
MalI GATC 3 cut(s) 644, 708, 760
MboI GATC 3 cut(s) 642, 706, 758
MboII GAAGA 7 cut(s) 62, 71, 697, 758, 897, 923, 969
MfeI CAATTG 2 cut(s) 212, 339
MluCI AATT 6 cut(s) 212, 339, 447, 801, 877, 1029
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 6 cut(s) 244, 562, 733, 913, 1018, 1077
Mph1103I ATGCAT 1 cut(s) 406
MseI TTAA 3 cut(s) 431, 593, 918
MslI CAYNNNNRTG 3 cut(s) 357, 702, 1055
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 3 cut(s) 22, 465, 510
MunI CAATTG 2 cut(s) 212, 339
MvaI CCWGG 2 cut(s) 465, 510
MvnI CGCG 1 cut(s) 792
MwoI GCNNNNNNNGC 3 cut(s) 554, 752, 857
NciI CCSGG 1 cut(s) 22
NdeII GATC 3 cut(s) 642, 706, 758
NlaIII CATG 5 cut(s) 86, 359, 408, 662, 701
NlaIV GGNNCC 1 cut(s) 1014
NmuCI GTSAC 2 cut(s) 297, 1073
NsiI ATGCAT 1 cut(s) 406
NspI RCATGY 1 cut(s) 408
PfeI GAWTC 4 cut(s) 122, 308, 631, 794
PkrI GCNGC 5 cut(s) 286, 550, 745, 748, 816
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PsiI TTATAA 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 463, 508
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 2 cut(s) 463, 508
PspN4I GGNNCC 1 cut(s) 1014
PspPI GGNCC 3 cut(s) 19, 184, 253
PstI CTGCAG 1 cut(s) 816
RsaI GTAC 2 cut(s) 105, 462
RsaNI GTAC 2 cut(s) 104, 461
RseI CAYNNNNRTG 3 cut(s) 357, 702, 1055
SaqAI TTAA 3 cut(s) 431, 593, 918
SatI GCNGC 5 cut(s) 285, 549, 744, 747, 815
Sau3AI GATC 3 cut(s) 642, 706, 758
Sau96I GGNCC 3 cut(s) 19, 184, 253
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 3 cut(s) 22, 465, 510
SexAI ACCWGGT 1 cut(s) 508
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 812
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 3 cut(s) 357, 702, 1055
SmlI CTYRAG 1 cut(s) 646
SmoI CTYRAG 1 cut(s) 646
Sse9I AATT 6 cut(s) 212, 339, 447, 801, 877, 1029
SsiI CCGC 1 cut(s) 260
SspMI CTAG 5 cut(s) 9, 71, 245, 552, 1070
StyD4I CCNGG 3 cut(s) 20, 463, 508
StyI CCWWGG 3 cut(s) 8, 113, 951
TaaI ACNGT 4 cut(s) 540, 591, 669, 1000
TaqI TCGA 2 cut(s) 31, 781
TasI AATT 6 cut(s) 212, 339, 447, 801, 877, 1029
TfiI GAWTC 4 cut(s) 122, 308, 631, 794
Tru1I TTAA 3 cut(s) 431, 593, 918
Tru9I TTAA 3 cut(s) 431, 593, 918
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 2 cut(s) 297, 1073
TseI GCWGC 5 cut(s) 284, 548, 743, 746, 814
Tsp45I GTSAC 2 cut(s) 297, 1073
TspDTI ATGAA 6 cut(s) 17, 71, 162, 435, 636, 1073
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 253
XapI RAATTY 3 cut(s) 447, 877, 1029
XceI RCATGY 1 cut(s) 408
XmaJI CCTAGG 1 cut(s) 8
XspI CTAG 5 cut(s) 9, 71, 245, 552, 1070
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.