Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029643

Physical Location & Seq

Genomic Coordinates Reverse (-)

27137086 .. 27139219

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATATTGATCCAATTAGGAACGACGCCGTGTACATGTTATCGTAAGAGACTTGACTGTGCTGGTGAGCTATTGCAGCTTAGGGGTTATCTCAAATTGATTGAGTTGGGTCTTAAGGTGCATGGAGCTCTTAGATGCTTGGCTTTTCTCTCTATGGACTTGGATGATATAGTGGTCCTGAAACTAATTCTCGCTTTGTTCCCATGCTTGCTTACAATTGTATCATCTCCTCAGGTGTGTGACAAATATTTACGCACAAAATCCTATTCAATTGTTTATTCATGTATTGCCGTGATGGGGGTGATGAGTGGTGTATATAAGGTATTTGATTTGTTATCTATTCTGGGAAGTTACGATCTGAAGTGCGTTAAATTAAGCTTCTTCTATTATGAATTAACAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008536 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017038 GO:0019899 GO:0022613 GO:0031267 GO:0031647 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042254 GO:0042393 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050821 GO:0051020 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

IBN_N Xpo1

Protein Analysis

134

Amino Acids

15.08

Weight (kDa)

8.4

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0029643)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334921
rosa_samantha	Rh5AG510500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	380
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflII	CTTAAG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	270
AluBI	AGCT	4 cut(s)	70, 79, 128, 378
AluI	AGCT	4 cut(s)	70, 79, 128, 378
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	77, 313
AvaII	GGWCC	1 cut(s)	175
AxyI	CCTNAGG	1 cut(s)	231
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BanII	GRGCYC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	2 cut(s)	13, 275
BcoDI	GTCTC	1 cut(s)	43
BfrI	CTTAAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmsI	GCATC	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse21I	CCTNAGG	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	8
BseGI	GGATG	1 cut(s)	169
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	88
BsiHKAI	GWGCWC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp1407I	TGTACA	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	9, 355
BspCNI	CTCAG	1 cut(s)	244
BspPI	GGATC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	32
BssMI	GATC	2 cut(s)	9, 355
BssNI	GRCGYC	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	59
BstACI	GRCGYC	1 cut(s)	26
BstAFI	CTTAAG	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	3 cut(s)	80, 131, 231
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	2 cut(s)	12, 358
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	2 cut(s)	9, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNSI	RCATGY	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	88
Bsu36I	CCTNAGG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	4 cut(s)	36, 122, 204, 282
CviJI	RGCY	5 cut(s)	70, 79, 128, 143, 378
CviKI_1	RGCY	5 cut(s)	70, 79, 128, 143, 378
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	3 cut(s)	80, 131, 231
DpnI	GATC	2 cut(s)	11, 357
DpnII	GATC	2 cut(s)	9, 355
Ecl136II	GAGCTC	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	380
Eco81I	CCTNAGG	1 cut(s)	231
EcoICRI	GAGCTC	1 cut(s)	128
EcoT38I	GRGCYC	1 cut(s)	130
FaeI	CATG	4 cut(s)	39, 125, 207, 285
FaiI	YATR	9 cut(s)	37, 123, 155, 170, 205, 283, 316, 318, 390
FatI	CATG	4 cut(s)	35, 121, 203, 281
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	1 cut(s)	77
GluI	GCNGC	1 cut(s)	77
HgaI	GACGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	39, 125, 207, 285
HindIII	AAGCTT	1 cut(s)	376
HphI	GGTGA	2 cut(s)	77, 313
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	360
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	76, 121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	3 cut(s)	80, 131, 231
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	4 cut(s)	39, 125, 207, 285
Kzo9I	GATC	2 cut(s)	9, 355
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	4 cut(s)	48, 191, 218, 329
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	125
MaeIII	GTNAC	2 cut(s)	239, 350
MalI	GATC	2 cut(s)	11, 357
MboI	GATC	2 cut(s)	9, 355
MboII	GAAGA	1 cut(s)	373
MfeI	CAATTG	2 cut(s)	216, 270
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	7 cut(s)	14, 95, 186, 216, 270, 371, 392
MnlI	CCTC	1 cut(s)	240
MseI	TTAA	5 cut(s)	114, 369, 374, 395, 403
MspCI	CTTAAG	1 cut(s)	113
MunI	CAATTG	2 cut(s)	216, 270
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	2 cut(s)	9, 355
NlaIII	CATG	4 cut(s)	39, 125, 207, 285
NmuCI	GTSAC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	39
PciI	ACATGT	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	78
PscI	ACATGT	1 cut(s)	35
Psp124BI	GAGCTC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	175
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SacI	GAGCTC	1 cut(s)	130
SaqAI	TTAA	5 cut(s)	114, 369, 374, 395, 403
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	2 cut(s)	9, 355
Sau96I	GGNCC	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	7 cut(s)	72, 81, 120, 130, 237, 324, 380
SfaNI	GCATC	1 cut(s)	125
SinI	GGWCC	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	7 cut(s)	14, 95, 186, 216, 270, 371, 392
SspI	AATATT	1 cut(s)	248
SstI	GAGCTC	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	59
TasI	AATT	7 cut(s)	14, 95, 186, 216, 270, 371, 392
TatI	WGTACW	1 cut(s)	32
Tru1I	TTAA	5 cut(s)	114, 369, 374, 395, 403
Tru9I	TTAA	5 cut(s)	114, 369, 374, 395, 403
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	270, 405
Vha464I	CTTAAG	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	175
XceI	RCATGY	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.