Rh5AG510500

Importin-9

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
86283369 .. 86284171
803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG510500.1

Sequence Viewer

Length: 360 bp
ATGGCTATAGCATCAATAGCAAGTTATGATTGGCCAAAAGATTGGCCGGACTTATTACCGTATCTAATGAAGTTGATTAACAACCAAACCAATATGAATGGAGTGCATGGAGCTCTTAGATGCTTGGCTCTTCTCTCTGTGGACTTGGATGATACAGTGGTCCTGACACTAATTCCCGCTTTGTTCCCATGCTTACTTACAATTGTATCATCTCCTCAGGTGTATGATAAATATTTACGCACAAAATCCTATTCAATTGTTTATTCATGTATCGCCGTGTTCGGGGTGATAAGTGGTGTATATAAGGTATTTGATTTGTTATCTATTCTAATGAACTTCCCACGATCTGAAGTGCGGTAA

Protein Analysis

119

Amino Acids

13.35

Weight (kDa)

6.52

Isoelectric Point (pI)

28.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029643)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0334921
rosa_samantha Rh5AG510500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 177, 355
AcoI YGGCCR 2 cut(s) 32, 44
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 1 cut(s) 255
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw21I GWGCWC 1 cut(s) 115
AoxI GGCC 2 cut(s) 32, 44
AspS9I GGNCC 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 298
AvaII GGWCC 1 cut(s) 160
AxyI CCTNAGG 1 cut(s) 216
BaeI ACNNNNGTAYC 4 cut(s) 144, 177, 189, 222
BalI TGGCCA 1 cut(s) 34
BanII GRGCYC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 115
BceAI ACGGC 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 6
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 160
BmsI GCATC 2 cut(s) 20, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse21I CCTNAGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 204
BshFI GGCC 2 cut(s) 34, 46
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 282
BsnI GGCC 2 cut(s) 34, 46
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 344
BspACI CCGC 2 cut(s) 177, 355
BspANI GGCC 2 cut(s) 34, 46
BspCNI CTCAG 1 cut(s) 229
BspQI GCTCTTC 1 cut(s) 135
BssMI GATC 1 cut(s) 344
Bst4CI ACNGT 2 cut(s) 60, 157
Bst6I CTCTTC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 116, 216
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 1 cut(s) 347
BstMBI GATC 1 cut(s) 344
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 6
BstXI CCANNNNNNTGG 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 2 cut(s) 34, 46
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 160
CviAII CATG 3 cut(s) 107, 189, 267
CviJI RGCY 5 cut(s) 5, 34, 46, 113, 128
CviKI_1 RGCY 5 cut(s) 5, 34, 46, 113, 128
DdeI CTNAG 2 cut(s) 116, 216
DpnI GATC 1 cut(s) 346
DpnII GATC 1 cut(s) 344
EaeI YGGCCR 2 cut(s) 32, 44
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 113
Eco81I CCTNAGG 1 cut(s) 216
EcoICRI GAGCTC 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 115
FaeI CATG 3 cut(s) 110, 192, 270
FaiI YATR 9 cut(s) 8, 27, 95, 108, 190, 225, 268, 301, 303
FatI CATG 3 cut(s) 106, 188, 266
FauI CCCGC 1 cut(s) 184
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 115
HaeIII GGCC 2 cut(s) 34, 46
HapII CCGG 1 cut(s) 47
Hin1II CATG 3 cut(s) 110, 192, 270
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 142
HpyCH4III ACNGT 2 cut(s) 60, 157
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 2 cut(s) 116, 216
Hsp92II CATG 3 cut(s) 110, 192, 270
Kzo9I GATC 1 cut(s) 344
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 3 cut(s) 60, 176, 203
LweI GCATC 2 cut(s) 20, 110
MalI GATC 1 cut(s) 346
MboI GATC 1 cut(s) 344
MboII GAAGA 1 cut(s) 122
MfeI CAATTG 2 cut(s) 201, 255
MhlI GDGCHC 1 cut(s) 115
MlsI TGGCCA 1 cut(s) 34
MluCI AATT 3 cut(s) 171, 201, 255
MluNI TGGCCA 1 cut(s) 34
MnlI CCTC 1 cut(s) 225
Mox20I TGGCCA 1 cut(s) 34
MscI TGGCCA 1 cut(s) 34
MseI TTAA 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 34
MspI CCGG 1 cut(s) 47
MunI CAATTG 2 cut(s) 201, 255
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 1 cut(s) 344
NlaIII CATG 3 cut(s) 110, 192, 270
PciSI GCTCTTC 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 160
SacI GAGCTC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 1 cut(s) 344
Sau96I GGNCC 1 cut(s) 160
SduI GDGCHC 1 cut(s) 115
SetI ASST 3 cut(s) 115, 222, 309
SfaNI GCATC 2 cut(s) 20, 110
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 160
Sse9I AATT 3 cut(s) 171, 201, 255
SsiI CCGC 2 cut(s) 177, 355
SspI AATATT 1 cut(s) 233
SstI GAGCTC 1 cut(s) 115
TaaI ACNGT 2 cut(s) 60, 157
TasI AATT 3 cut(s) 171, 201, 255
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 162
TspDTI ATGAA 4 cut(s) 83, 110, 255, 347
TspRI CASTG 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.