Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029659

Physical Location & Seq

Genomic Coordinates Reverse (-)

34686958 .. 34688387

Gene Structure 1430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGCACCCTCTTATCAAGCATGTGGTTCCCGACCCATGAAAGAGCTAGTGCAGTTGGAATTTCTATGGCTGGGTTTCATCTTGGCAATGTTACCGGCTTACTACTAACTCCAATTATGCTGTCATCAATGGGATTTTCTGGTCCCTTTATTCTCTTCTCCTCCCTTGGACTGCTCTGGTTGACAATATGGACATATACAATCACAAATGATCTAAGAGAGAGTGATTTCATCAGCAAATCAGAGCTCCGGTTGATCCAAGTTGGAAAATCTGATTCTCCAGTCACTACTACAGAAAACATGATTTTAGTGTGTAGCGAAGAAGAAAGAAAGAAGAGGGATATTCATTGCGACCAAACCCGTAGATTGGCTGGGTCAGATCTAACTCCTTATGACAAGCGAGGGTCAATGTTCGTTCTGGTCAGAGGAGATATATGTTTAATTTTATCAATTTTATATCTTGAGTTTGATTCTTCAAAATTCTGGCTGGACCAATCTCTCTCAACTTCTCAGAACATGTGCAAGGGAAGCACAGTACAATCACCTTCAGATTATCATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

187

Amino Acids

20.96

Weight (kDa)

5.77

Isoelectric Point (pI)

55.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	5 - 83	3.9e-12	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029659)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0342891
rosa_roxburghii	Rroxscaffold_7G00194580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	250
AcsI	RAATTY	2 cut(s)	60, 479
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	1 cut(s)	537
AfiI	CCNNNNNNNGG	1 cut(s)	367
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	1 cut(s)	477
AluBI	AGCT	2 cut(s)	47, 247
AluI	AGCT	2 cut(s)	47, 247
Alw21I	GWGCWC	2 cut(s)	8, 249
AlwI	GGATC	1 cut(s)	250
ApoI	RAATTY	2 cut(s)	60, 479
AspS9I	GGNCC	2 cut(s)	143, 490
AsuHPI	GGTGA	1 cut(s)	534
AvaII	GGWCC	2 cut(s)	143, 490
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	2 cut(s)	8, 249
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	291
BglII	AGATCT	1 cut(s)	379
Bme18I	GGWCC	2 cut(s)	143, 490
BmgT120I	GGNCC	2 cut(s)	143, 490
BmiI	GGNNCC	2 cut(s)	29, 145
BpmI	CTGGAG	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	482
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	281
Bse3DI	GCAATG	2 cut(s)	94, 346
BseDI	CCNNGG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMI	GCAATG	2 cut(s)	94, 346
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	1 cut(s)	281
BseRI	GAGGAG	2 cut(s)	151, 441
BseYI	CCCAGC	2 cut(s)	71, 371
BsgI	GTGCAG	1 cut(s)	72
BsiHKAI	GWGCWC	2 cut(s)	8, 249
BsiSI	CCGG	2 cut(s)	96, 250
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	129
Bsp1286I	GDGCHC	2 cut(s)	8, 249
Bsp143I	GATC	3 cut(s)	211, 255, 379
BspCNI	CTCAG	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	29, 145
BspPI	GGATC	1 cut(s)	250
BsrDI	GCAATG	2 cut(s)	94, 346
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	281
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	3 cut(s)	211, 255, 379
BssT1I	CCWWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	535
Bst6I	CTCTTC	2 cut(s)	161, 329
BstDEI	CTNAG	2 cut(s)	215, 510
BstKTI	GATC	3 cut(s)	214, 258, 382
BstMBI	GATC	3 cut(s)	211, 255, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	528
BstNSI	RCATGY	2 cut(s)	25, 520
BstSFI	CTRYAG	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	143, 490
Csp6I	GTAC	1 cut(s)	536
CviAII	CATG	4 cut(s)	22, 38, 301, 517
CviJI	RGCY	6 cut(s)	47, 71, 99, 247, 371, 487
CviKI_1	RGCY	6 cut(s)	47, 71, 99, 247, 371, 487
CviQI	GTAC	1 cut(s)	536
DdeI	CTNAG	2 cut(s)	215, 510
DpnI	GATC	3 cut(s)	213, 257, 381
DpnII	GATC	3 cut(s)	211, 255, 379
Eam1104I	CTCTTC	2 cut(s)	161, 329
EarI	CTCTTC	2 cut(s)	161, 329
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	2 cut(s)	143, 490
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	531
EcoICRI	GAGCTC	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	4 cut(s)	25, 41, 304, 520
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	4 cut(s)	21, 37, 300, 516
FriOI	GRGCYC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	48
GsaI	CCCAGC	2 cut(s)	75, 375
GsuI	CTGGAG	1 cut(s)	264
HapII	CCGG	2 cut(s)	96, 250
Hin1II	CATG	4 cut(s)	25, 41, 304, 520
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	2 cut(s)	275, 470
HpaII	CCGG	2 cut(s)	96, 250
HphI	GGTGA	1 cut(s)	534
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	6 cut(s)	244, 274, 379, 425, 513, 550
Hpy188III	TCNNGA	2 cut(s)	31, 461
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	555
HpyCH4III	ACNGT	1 cut(s)	535
HpyCH4V	TGCA	2 cut(s)	53, 522
HpyF10VI	GCNNNNNNNGC	1 cut(s)	528
HpyF3I	CTNAG	2 cut(s)	215, 510
Hsp92II	CATG	4 cut(s)	25, 41, 304, 520
Kzo9I	GATC	3 cut(s)	211, 255, 379
LmnI	GCTCC	1 cut(s)	252
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	91, 283
MalI	GATC	3 cut(s)	213, 257, 381
MboI	GATC	3 cut(s)	211, 255, 379
MboII	GAAGA	5 cut(s)	148, 332, 335, 346, 465
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	2 cut(s)	8, 249
MluCI	AATT	5 cut(s)	60, 114, 441, 450, 479
MmeI	TCCRAC	2 cut(s)	37, 244
MnlI	CCTC	5 cut(s)	20, 172, 330, 395, 419
MseI	TTAA	1 cut(s)	440
MspI	CCGG	2 cut(s)	96, 250
MwoI	GCNNNNNNNGC	1 cut(s)	528
NdeII	GATC	3 cut(s)	211, 255, 379
NlaIII	CATG	4 cut(s)	25, 41, 304, 520
NlaIV	GGNNCC	2 cut(s)	29, 145
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	2 cut(s)	25, 520
PciI	ACATGT	1 cut(s)	516
PfeI	GAWTC	2 cut(s)	275, 470
PscI	ACATGT	1 cut(s)	516
Psp124BI	GAGCTC	1 cut(s)	249
PspFI	CCCAGC	2 cut(s)	71, 371
PspN4I	GGNNCC	2 cut(s)	29, 145
PspPI	GGNCC	2 cut(s)	143, 490
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	1 cut(s)	537
RsaNI	GTAC	1 cut(s)	536
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	440
Sau3AI	GATC	3 cut(s)	211, 255, 379
Sau96I	GGNCC	2 cut(s)	143, 490
SduI	GDGCHC	2 cut(s)	8, 249
SetI	ASST	3 cut(s)	49, 249, 547
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	2 cut(s)	143, 490
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	5 cut(s)	60, 114, 441, 450, 479
SspMI	CTAG	1 cut(s)	48
SstI	GAGCTC	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	535
TasI	AATT	5 cut(s)	60, 114, 441, 450, 479
TatI	WGTACW	1 cut(s)	535
TfiI	GAWTC	2 cut(s)	275, 470
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	4 cut(s)	54, 68, 220, 335
VpaK11BI	GGWCC	2 cut(s)	143, 490
XapI	RAATTY	2 cut(s)	60, 479
XceI	RCATGY	2 cut(s)	25, 520
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.