RchiOBHm_Chr1g0343081

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
34945671 .. 34946030
360 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGGAAACCATATTCCGATATCCTTCACTTTTCCTCCTTGCATTCTTCATTCATTTTCTTACAGTCCTCTCTCTTACAGAAGACGATCATGATCAAAACCCTAGCGCTGTTTTTACCCTTGATATGATCCACTGTGACTTGCCGGCGTCTCCCTTCTACAATCCATCAAAAACTCATTGGCAACGACTAAGCAATGCCCTGCGACGCTCACATCACAGGCACCGTTTCAAATCAGGGAAAGTTGAGAAAACTGCTCTAATCTTTAGCGGAGGAGAGTACCTGATGAACATATCAATAGGTAAACTATCCAAACCTTTCAACGACATTGTCGACACTGGAAGCGATCTTATATGGACGTAA

Protein Analysis

119

Amino Acids

13.74

Weight (kDa)

7.06

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024786)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0343081
rosa_samantha Rh1BG128100 Rh1DG164300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 219
AccI GTMKAC 1 cut(s) 330
AciI CCGC 1 cut(s) 267
AclWI GGATC 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 146
AfaI GTAC 1 cut(s) 278
AfeI AGCGCT 1 cut(s) 106
AgsI TTSAA 2 cut(s) 229, 319
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 1 cut(s) 121
Aor51HI AGCGCT 1 cut(s) 106
AspLEI GCGC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 87
BccI CCATC 1 cut(s) 172
BclI TGATCA 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 146
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bse118I RCCGGY 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 199
Bse8I GATNNNNATC 1 cut(s) 90
BseJI GATNNNNATC 1 cut(s) 90
BseMI GCAATG 1 cut(s) 199
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 285
BshNI GGYRCC 1 cut(s) 219
BsiSI CCGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 153
BsmBI CGTCTC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 41
Bsp143I GATC 4 cut(s) 85, 91, 126, 343
BspACI CCGC 1 cut(s) 267
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 221
BspPI GGATC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 142
BsrI ACTGG 1 cut(s) 340
BssAI RCCGGY 1 cut(s) 142
BssMI GATC 4 cut(s) 85, 91, 126, 343
BssNI GRCGYC 1 cut(s) 146
Bst4CI ACNGT 3 cut(s) 64, 134, 224
BstACI GRCGYC 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 188
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 4 cut(s) 88, 94, 129, 346
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 4 cut(s) 85, 91, 126, 343
BstV2I GAAGAC 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 130, 333
Cac8I GCNNGC 1 cut(s) 144
CciI TCATGA 1 cut(s) 88
CfoI GCGC 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 142
CseI GACGC 2 cut(s) 135, 213
Csp6I GTAC 1 cut(s) 277
CviAII CATG 1 cut(s) 89
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 1 cut(s) 188
DpnI GATC 4 cut(s) 87, 93, 128, 345
DpnII GATC 4 cut(s) 85, 91, 126, 343
Eco32I GATATC 1 cut(s) 20
Eco47III AGCGCT 1 cut(s) 106
EcoRV GATATC 1 cut(s) 20
Esp3I CGTCTC 1 cut(s) 153
FaeI CATG 1 cut(s) 92
FaiI YATR 6 cut(s) 11, 90, 125, 290, 350, 352
FatI CATG 1 cut(s) 88
FbaI TGATCA 1 cut(s) 91
FblI GTMKAC 1 cut(s) 330
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 106
HaeII RGCGCY 1 cut(s) 108
HapII CCGG 1 cut(s) 143
HgaI GACGC 2 cut(s) 135, 213
HhaI GCGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HpaII CCGG 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 302, 331
Hpy188I TCNGA 1 cut(s) 17
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 2 cut(s) 302, 331
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 33, 163
HpyCH4III ACNGT 3 cut(s) 64, 134, 224
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 356
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 1 cut(s) 105
KroI GCCGGC 1 cut(s) 142
KroNI GCCGGC 1 cut(s) 144
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 4 cut(s) 85, 91, 126, 343
LpnPI CCDG 6 cut(s) 156, 202, 212, 219, 293, 321
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 356
MaeIII GTNAC 1 cut(s) 134
MalI GATC 4 cut(s) 87, 93, 128, 345
MboI GATC 4 cut(s) 85, 91, 126, 343
MboII GAAGA 2 cut(s) 37, 92
MnlI CCTC 3 cut(s) 44, 77, 263
MroNI GCCGGC 1 cut(s) 142
MspI CCGG 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 41
NaeI GCCGGC 1 cut(s) 144
NdeII GATC 4 cut(s) 85, 91, 126, 343
NgoMIV GCCGGC 1 cut(s) 142
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 134
PagI TCATGA 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PctI GAATGC 1 cut(s) 41
PdiI GCCGGC 1 cut(s) 144
PflFI GACNNNGTC 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 221
PsyI GACNNNGTC 1 cut(s) 326
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SalI GTCGAC 1 cut(s) 329
Sau3AI GATC 4 cut(s) 85, 91, 126, 343
SetI ASST 4 cut(s) 282, 301, 316, 359
SsiI CCGC 1 cut(s) 267
SspMI CTAG 1 cut(s) 102
TaaI ACNGT 3 cut(s) 64, 134, 224
TaiI ACGT 1 cut(s) 359
TaqI TCGA 1 cut(s) 330
TscAI CASTG 2 cut(s) 137, 340
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 3 cut(s) 37, 41, 299
TspRI CASTG 2 cut(s) 137, 340
Tth111I GACNNNGTC 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.