Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0024786

Physical Location & Seq

Genomic Coordinates Reverse (-)

33781999 .. 33782553

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG164300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAAACCATATTCCGTTATCCTTCACTTTTCCTCCATGCATTCTTCATTCATTTTCTTACAGTCCTCTCTCTTACAGAAGATGATCATGATCAAAACCCTAGCGCTGTTTTTACCCTTGATATGATCCACTGTGACTTGCCGGCGTCTCCCTTCTACAATCCATCAGAAACTCATTGGCAACGACTAAGCAATGCCCTGCGACACTCACATCACAGGCACCATAGTAGGCACCGTTTCAAATCAGGGAAAGTTGAGAAAACTGCTCTAATCTTTAGCGGAGGAGAGTACCTGGTGAACATATCAATAGGTAAACTATCCAAACCTTTCAACGACATTGTCGACACTGGAAGCGATCTTATATGGACGCAATGCATTCCATGTAAGGATTGCTTCAAGCAGAAGATCCCACTCTTCGATCTAACCTCTTCTCTGACTTATAAAGCCTTCTCTTGTGCGTCCAAAAAGTGCCACTTGCTAACCAAAACCTCTTGTTCTAGCACACAGTTTTGTCACTATAATTACACATATAGAGATGGTTCTTATACCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

184

Amino Acids

21.22

Weight (kDa)

8.4

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	97 - 183	1.8e-21	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024786)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343081
rosa_samantha	Rh1BG128100 Rh1DG164300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AccB1I	GGYRCC	2 cut(s)	219, 231
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	2 cut(s)	121, 400
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	1 cut(s)	290
AfeI	AGCGCT	1 cut(s)	106
AgsI	TTSAA	3 cut(s)	241, 331, 397
AjnI	CCWGG	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	2 cut(s)	121, 400
Aor51HI	AGCGCT	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	307
BanI	GGYRCC	2 cut(s)	219, 231
BccI	CCATC	2 cut(s)	172, 530
BciT130I	CCWGG	1 cut(s)	293
BclI	TGATCA	2 cut(s)	85, 91
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	2 cut(s)	102, 498
BfoI	RGCGCY	1 cut(s)	108
Bme1390I	CCNGG	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	221, 233
BmrFI	CCNGG	1 cut(s)	293
BsaBI	GATNNNNATC	1 cut(s)	90
BsaHI	GRCGYC	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	2 cut(s)	199, 377
Bse8I	GATNNNNATC	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	293
BseJI	GATNNNNATC	1 cut(s)	90
BseMI	GCAATG	2 cut(s)	199, 377
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	297
BshNI	GGYRCC	2 cut(s)	219, 231
BsiSI	CCGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	153
BsmBI	CGTCTC	1 cut(s)	153
BsmI	GAATGC	2 cut(s)	41, 375
Bsp143I	GATC	6 cut(s)	85, 91, 126, 355, 405, 418
BspACI	CCGC	1 cut(s)	279
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	221, 233
BspPI	GGATC	2 cut(s)	121, 400
BspT107I	GGYRCC	2 cut(s)	219, 231
BsrDI	GCAATG	2 cut(s)	199, 377
BsrFI	RCCGGY	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	352
BssAI	RCCGGY	1 cut(s)	142
BssMI	GATC	6 cut(s)	85, 91, 126, 355, 405, 418
BssNI	GRCGYC	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	4 cut(s)	64, 134, 236, 507
Bst6I	CTCTTC	2 cut(s)	419, 433
BstACI	GRCGYC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	6 cut(s)	88, 94, 129, 358, 408, 421
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	6 cut(s)	85, 91, 126, 355, 405, 418
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BtsIMutI	CAGTG	2 cut(s)	130, 345
Cac8I	GCNNGC	1 cut(s)	144
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	142
CseI	GACGC	3 cut(s)	135, 376, 447
CsiI	ACCWGGT	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	3 cut(s)	38, 89, 381
CviJI	RGCY	1 cut(s)	446
CviKI_1	RGCY	1 cut(s)	446
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	6 cut(s)	87, 93, 128, 357, 407, 420
DpnII	GATC	6 cut(s)	85, 91, 126, 355, 405, 418
Eam1104I	CTCTTC	2 cut(s)	419, 433
EarI	CTCTTC	2 cut(s)	419, 433
Eco47III	AGCGCT	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	291
EcoT22I	ATGCAT	2 cut(s)	43, 377
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	3 cut(s)	41, 92, 384
FalI	AAGNNNNNCTT	4 cut(s)	377, 409, 458, 490
FatI	CATG	3 cut(s)	37, 88, 380
FbaI	TGATCA	2 cut(s)	85, 91
FblI	GTMKAC	1 cut(s)	342
FspBI	CTAG	2 cut(s)	102, 498
GlaI	GCGC	1 cut(s)	106
HaeII	RGCGCY	1 cut(s)	108
HapII	CCGG	1 cut(s)	143
HgaI	GACGC	3 cut(s)	135, 376, 447
HhaI	GCGC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	41, 92, 384
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	3 cut(s)	298, 314, 343
Hpy188I	TCNGA	2 cut(s)	169, 435
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	3 cut(s)	298, 314, 343
HpyAV	CCTTC	3 cut(s)	33, 163, 457
HpyCH4III	ACNGT	4 cut(s)	64, 134, 236, 507
HpyCH4V	TGCA	2 cut(s)	41, 375
HpyF3I	CTNAG	1 cut(s)	188
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	3 cut(s)	41, 92, 384
HspAI	GCGC	1 cut(s)	105
KroI	GCCGGC	1 cut(s)	142
KroNI	GCCGGC	1 cut(s)	144
Ksp22I	TGATCA	2 cut(s)	85, 91
Kzo9I	GATC	6 cut(s)	85, 91, 126, 355, 405, 418
LpnPI	CCDG	7 cut(s)	156, 202, 212, 231, 278, 305, 333
MabI	ACCWGGT	1 cut(s)	291
MaeI	CTAG	2 cut(s)	102, 498
MaeIII	GTNAC	2 cut(s)	134, 512
MalI	GATC	6 cut(s)	87, 93, 128, 357, 407, 420
MboI	GATC	6 cut(s)	85, 91, 126, 355, 405, 418
MboII	GAAGA	5 cut(s)	37, 92, 406, 415, 420
MflI	RGATCY	1 cut(s)	405
MluCI	AATT	1 cut(s)	520
MnlI	CCTC	5 cut(s)	44, 77, 275, 436, 499
Mph1103I	ATGCAT	2 cut(s)	43, 377
MroNI	GCCGGC	1 cut(s)	142
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	293
Mva1269I	GAATGC	2 cut(s)	41, 375
MvaI	CCWGG	1 cut(s)	293
NaeI	GCCGGC	1 cut(s)	144
NdeII	GATC	6 cut(s)	85, 91, 126, 355, 405, 418
NgoMIV	GCCGGC	1 cut(s)	142
NlaIII	CATG	3 cut(s)	41, 92, 384
NlaIV	GGNNCC	2 cut(s)	221, 233
NmuCI	GTSAC	2 cut(s)	134, 512
NsiI	ATGCAT	2 cut(s)	43, 377
PagI	TCATGA	1 cut(s)	88
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PctI	GAATGC	2 cut(s)	41, 375
PdiI	GCCGGC	1 cut(s)	144
PflFI	GACNNNGTC	1 cut(s)	338
PsiI	TTATAA	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	221, 233
PsuI	RGATCY	1 cut(s)	405
PsyI	GACNNNGTC	1 cut(s)	338
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SalI	GTCGAC	1 cut(s)	341
Sau3AI	GATC	6 cut(s)	85, 91, 126, 355, 405, 418
ScrFI	CCNGG	1 cut(s)	293
SetI	ASST	6 cut(s)	294, 313, 328, 428, 491, 554
SexAI	ACCWGGT	1 cut(s)	291
Sse9I	AATT	1 cut(s)	520
SsiI	CCGC	1 cut(s)	279
SspMI	CTAG	2 cut(s)	102, 498
StyD4I	CCNGG	1 cut(s)	291
TaaI	ACNGT	4 cut(s)	64, 134, 236, 507
TaqI	TCGA	2 cut(s)	342, 417
TasI	AATT	1 cut(s)	520
TscAI	CASTG	2 cut(s)	137, 352
TseFI	GTSAC	2 cut(s)	134, 512
Tsp45I	GTSAC	2 cut(s)	134, 512
TspDTI	ATGAA	2 cut(s)	37, 41
TspGWI	ACGGA	1 cut(s)	5
TspRI	CASTG	2 cut(s)	137, 352
Tth111I	GACNNNGTC	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	2 cut(s)	102, 498
Zsp2I	ATGCAT	2 cut(s)	43, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.