Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029613

Physical Location & Seq

Genomic Coordinates Forward (+)

34970133 .. 34972307

Gene Structure 2175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTACTCTAGTTGTGGTCGCTTGGAAACCTCCATACGAGTATTTGAGCAAATGTACATAAAGGATGTGGTGACATGGACTTCGTTGATCTCTGCATATGGGACATGTGGTGAAGGTGAGAAAGCATTGAGAGCTTTTGAAGAAATGGAAGCAACTGGTGTTCTTCCTGATCATCTAGCTTTTCTGGCCGTCATATATGCTTGTAGCCATTCAGGTTTGGTAGAAGACGGTCTGGCTTACTTTGACCGAATGAAAAAACACTACAAAGTTGAGCCTAGGATGGAGCACTATGCTTGTGTAGTTGACCTCCTATCCCGCTCTGGGCTATTAGCTCAAGCCGAGGACTTTATCCATACAATGCCGATGAAGGCAGATGCAAGTATATGGGGATCTTTACTTAGTGCTTGCCGAGAAAATGGAGAAGAAAAGATAGCTGCACATGTCTCAGAGCAGATAGTTCAATTGAATTCTTATGACACGGGGTATCATATTTTGGTGTCGAATGTATATGCAGCTTTAGGGAAGTGGGATAAGGTGAGAATGATGAGGAAATACATGAAAGCTAAAGGACTCACAAAAGATCCTGAATTTAGCTGGATGGAGATTCAAAAGAAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

206

Amino Acids

23.31

Weight (kDa)

6.17

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	21 - 69	2.7e-10	PPR repeat family
PPR	PF01535	24 - 53	2.8e-07	PPR repeat
E_motif	PF20431	143 - 201	4.1e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029613)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343111
rosa_multiflora	Rmu_co8173910.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	318
AciI	CCGC	1 cut(s)	316
AclWI	GGATC	2 cut(s)	397, 575
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	2 cut(s)	466, 587
AfaI	GTAC	2 cut(s)	5, 56
AfiI	CCNNNNNNNGG	1 cut(s)	321
AflIII	ACRYGT	2 cut(s)	104, 439
AgsI	TTSAA	4 cut(s)	140, 461, 466, 608
AluBI	AGCT	7 cut(s)	134, 179, 332, 434, 515, 563, 594
AluI	AGCT	7 cut(s)	134, 179, 332, 434, 515, 563, 594
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	448
AlwI	GGATC	2 cut(s)	397, 575
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	434, 512
ApoI	RAATTY	2 cut(s)	466, 587
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
AspA2I	CCTAGG	1 cut(s)	275
AsuHPI	GGTGA	4 cut(s)	82, 122, 128, 547
AvrII	CCTAGG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	421, 524
BccI	CCATC	2 cut(s)	274, 592
BceAI	ACGGC	1 cut(s)	173
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	448
BfaI	CTAG	3 cut(s)	9, 176, 276
BisI	GCNGC	2 cut(s)	435, 513
BlnI	CCTAGG	1 cut(s)	275
BlsI	GCNGC	2 cut(s)	436, 514
BmsI	GCATC	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	275, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	160
BseDI	CCNNGG	2 cut(s)	275, 339
BseGI	GGATG	3 cut(s)	70, 285, 603
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	421, 524
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	4 cut(s)	87, 169, 389, 580
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	458
BspPI	GGATC	2 cut(s)	397, 575
BsrBI	CCGCTC	1 cut(s)	318
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	275, 339
BssMI	GATC	4 cut(s)	87, 169, 389, 580
BssT1I	CCWWGG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	230
BstAUI	TGTACA	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	2 cut(s)	398, 445
BstF5I	GGATG	3 cut(s)	70, 285, 603
BstKTI	GATC	4 cut(s)	90, 172, 392, 583
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	4 cut(s)	87, 169, 389, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 185
BstNSI	RCATGY	2 cut(s)	108, 443
BstV1I	GCAGC	2 cut(s)	421, 524
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	2 cut(s)	389, 580
BstYI	RGATCY	2 cut(s)	389, 580
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	3 cut(s)	70, 285, 603
Cac8I	GCNNGC	1 cut(s)	406
Csp6I	GTAC	2 cut(s)	4, 55
CviAII	CATG	4 cut(s)	75, 105, 440, 556
CviQI	GTAC	2 cut(s)	4, 55
DdeI	CTNAG	2 cut(s)	398, 445
DpnI	GATC	4 cut(s)	89, 171, 391, 582
DpnII	GATC	4 cut(s)	87, 169, 389, 580
EaeI	YGGCCR	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	4 cut(s)	78, 108, 443, 559
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	4 cut(s)	74, 104, 439, 555
FauI	CCCGC	1 cut(s)	323
FauNDI	CATATG	1 cut(s)	97
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	435, 513
FokI	GGATG	3 cut(s)	77, 292, 610
Fsp4HI	GCNGC	2 cut(s)	435, 513
FspBI	CTAG	3 cut(s)	9, 176, 276
GluI	GCNGC	2 cut(s)	435, 513
HaeIII	GGCC	1 cut(s)	188
Hin1II	CATG	4 cut(s)	78, 108, 443, 559
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	570, 604
HphI	GGTGA	4 cut(s)	82, 122, 128, 547
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	2 cut(s)	167, 584
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	3 cut(s)	107, 361, 607
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	4 cut(s)	95, 377, 437, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 185
HpyF3I	CTNAG	2 cut(s)	398, 445
Hsp92II	CATG	4 cut(s)	78, 108, 443, 559
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	87, 169, 389, 580
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	8 cut(s)	141, 170, 180, 198, 218, 306, 580, 597
Lsp1109I	GCAGC	2 cut(s)	421, 524
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	3 cut(s)	9, 176, 276
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	4 cut(s)	89, 171, 391, 582
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	4 cut(s)	87, 169, 389, 580
MboII	GAAGA	4 cut(s)	152, 155, 236, 434
MfeI	CAATTG	1 cut(s)	461
MflI	RGATCY	2 cut(s)	389, 580
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	3 cut(s)	461, 466, 587
MlyI	GAGTC	1 cut(s)	564
MnlI	CCTC	4 cut(s)	40, 317, 334, 540
MunI	CAATTG	1 cut(s)	461
MwoI	GCNNNNNNNGC	2 cut(s)	131, 185
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	4 cut(s)	87, 169, 389, 580
NlaIII	CATG	4 cut(s)	78, 108, 443, 559
NmeAIII	GCCGAG	2 cut(s)	364, 434
NmuCI	GTSAC	1 cut(s)	70
NspI	RCATGY	2 cut(s)	108, 443
PciI	ACATGT	2 cut(s)	104, 439
PfeI	GAWTC	1 cut(s)	604
PkrI	GCNGC	2 cut(s)	436, 514
PleI	GAGTC	1 cut(s)	564
PpsI	GAGTC	1 cut(s)	564
PscI	ACATGT	2 cut(s)	104, 439
PsuI	RGATCY	2 cut(s)	389, 580
RsaI	GTAC	2 cut(s)	5, 56
RsaNI	GTAC	2 cut(s)	4, 55
SatI	GCNGC	2 cut(s)	435, 513
Sau3AI	GATC	4 cut(s)	87, 169, 389, 580
SchI	GAGTC	1 cut(s)	564
SduI	GDGCHC	1 cut(s)	288
SfaNI	GCATC	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	3 cut(s)	461, 466, 587
SsiI	CCGC	1 cut(s)	316
SspMI	CTAG	3 cut(s)	9, 176, 276
StyI	CCWWGG	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	500
TaqII	GACCGA	1 cut(s)	261
TasI	AATT	3 cut(s)	461, 466, 587
TatI	WGTACW	2 cut(s)	3, 54
TfiI	GAWTC	1 cut(s)	604
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	434, 512
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	3 cut(s)	266, 380, 572
XapI	RAATTY	2 cut(s)	466, 587
XceI	RCATGY	2 cut(s)	108, 443
XmaJI	CCTAGG	1 cut(s)	275
XspI	CTAG	3 cut(s)	9, 176, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.