Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8173910.1

Orthogroup ID

OG0029613

Physical Location & Seq

Genomic Coordinates Reverse (-)

36 .. 656

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8173910.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgtactctagttgtggtagcttggaaagctccatacgaatatttgagcaaatgtacataaaggatgtggtgacatggacttcgttgatctctgcatatgggacatatggtgaaggtgagaatgcattgagagcatttgaagaaatggaagcaactggtgttcttcctgatcatctagcttttctagccgtcatatatgcttgtagccattcaggtttggtagaagacggtctggcttactttgaccgaatgaagaaacactacaaagttgagcctaggatggagcactatgcttgtgtagttgaccttctatcccgctctgggctattagctcaagctgaggactttatccatacaatgccgatgaaggctgatgcaagtatatggggatctttacttagtgcttgccgagaaaatggggaagaaaagatagctgcacatgtctcagagcagattgttcaattgaattcttatgacacggggtatcatgttttggtgtcgaatgtatatgcagctttagggaagtgggataaagtgagaatgatgaggaaacacatgaaagctaaaggactcacaaaagatcctggatttagctggatggagattcaaaagaagggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

206

Amino Acids

23.18

Weight (kDa)

6.06

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029613)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343111
rosa_multiflora	Rmu_co8173910.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	318
AciI	CCGC	1 cut(s)	316
AclWI	GGATC	2 cut(s)	397, 575
AcsI	RAATTY	1 cut(s)	466
AfaI	GTAC	2 cut(s)	5, 56
AfiI	CCNNNNNNNGG	1 cut(s)	321
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	4 cut(s)	140, 461, 466, 608
AjnI	CCWGG	1 cut(s)	583
AluBI	AGCT	9 cut(s)	21, 30, 179, 332, 338, 434, 515, 563, 594
AluI	AGCT	9 cut(s)	21, 30, 179, 332, 338, 434, 515, 563, 594
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	448
AlwI	GGATC	2 cut(s)	397, 575
ApeKI	GCWGC	2 cut(s)	434, 512
ApoI	RAATTY	1 cut(s)	466
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
AspA2I	CCTAGG	1 cut(s)	275
AsuHPI	GGTGA	3 cut(s)	82, 122, 128
AvrII	CCTAGG	1 cut(s)	275
BarI	GAAGNNNNNNTAC	4 cut(s)	245, 277, 291, 323
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	421, 524
BccI	CCATC	2 cut(s)	274, 592
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	585
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	448
BfaI	CTAG	4 cut(s)	9, 176, 185, 276
BisI	GCNGC	2 cut(s)	435, 513
BlnI	CCTAGG	1 cut(s)	275
BlsI	GCNGC	2 cut(s)	436, 514
Bme1390I	CCNGG	1 cut(s)	585
BmrFI	CCNGG	1 cut(s)	585
BmsI	GCATC	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	3 cut(s)	70, 285, 603
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	330, 459
BseNI	ACTGG	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	421, 524
BsgI	GTGCAG	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	4 cut(s)	87, 169, 389, 580
BspACI	CCGC	1 cut(s)	316
BspCNI	CTCAG	2 cut(s)	331, 458
BspPI	GGATC	2 cut(s)	397, 575
BsrBI	CCGCTC	1 cut(s)	318
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	4 cut(s)	87, 169, 389, 580
BssT1I	CCWWGG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	1 cut(s)	230
BstAUI	TGTACA	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	3 cut(s)	339, 398, 445
BstF5I	GGATG	3 cut(s)	70, 285, 603
BstKTI	GATC	4 cut(s)	90, 172, 392, 583
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	4 cut(s)	87, 169, 389, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 131, 185
BstNI	CCWGG	1 cut(s)	585
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	583
BstV1I	GCAGC	2 cut(s)	421, 524
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	2 cut(s)	389, 580
BstYI	RGATCY	2 cut(s)	389, 580
BtsCI	GGATG	3 cut(s)	70, 285, 603
Cac8I	GCNNGC	1 cut(s)	406
Csp6I	GTAC	2 cut(s)	4, 55
CviAII	CATG	4 cut(s)	75, 440, 488, 556
CviQI	GTAC	2 cut(s)	4, 55
DdeI	CTNAG	3 cut(s)	339, 398, 445
DpnI	GATC	4 cut(s)	89, 171, 391, 582
DpnII	GATC	4 cut(s)	87, 169, 389, 580
Eco130I	CCWWGG	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	275
EcoT22I	ATGCAT	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	4 cut(s)	78, 443, 491, 559
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	4 cut(s)	74, 439, 487, 555
FauI	CCCGC	1 cut(s)	323
FauNDI	CATATG	2 cut(s)	97, 106
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	435, 513
FokI	GGATG	3 cut(s)	77, 292, 610
Fsp4HI	GCNGC	2 cut(s)	435, 513
FspBI	CTAG	4 cut(s)	9, 176, 185, 276
GluI	GCNGC	2 cut(s)	435, 513
Hin1II	CATG	4 cut(s)	78, 443, 491, 559
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	570, 604
HphI	GGTGA	3 cut(s)	82, 122, 128
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	4 cut(s)	107, 317, 361, 607
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	5 cut(s)	95, 125, 377, 437, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 131, 185
HpyF3I	CTNAG	3 cut(s)	339, 398, 445
Hsp92II	CATG	4 cut(s)	78, 443, 491, 559
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	87, 169, 389, 580
LmnI	GCTCC	2 cut(s)	35, 283
LpnPI	CCDG	8 cut(s)	141, 180, 198, 218, 306, 570, 580, 597
Lsp1109I	GCAGC	2 cut(s)	421, 524
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	4 cut(s)	9, 176, 185, 276
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	4 cut(s)	89, 171, 391, 582
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	4 cut(s)	87, 169, 389, 580
MboII	GAAGA	5 cut(s)	152, 155, 236, 265, 434
MfeI	CAATTG	1 cut(s)	461
MflI	RGATCY	2 cut(s)	389, 580
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	2 cut(s)	461, 466
MlyI	GAGTC	1 cut(s)	564
MnlI	CCTC	2 cut(s)	334, 540
Mph1103I	ATGCAT	1 cut(s)	127
MspR9I	CCNGG	1 cut(s)	585
MunI	CAATTG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	3 cut(s)	27, 131, 185
NdeI	CATATG	2 cut(s)	97, 106
NdeII	GATC	4 cut(s)	87, 169, 389, 580
NlaIII	CATG	4 cut(s)	78, 443, 491, 559
NmeAIII	GCCGAG	1 cut(s)	434
NmuCI	GTSAC	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	127
NspI	RCATGY	1 cut(s)	443
PciI	ACATGT	1 cut(s)	439
PctI	GAATGC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	604
PfoI	TCCNGGA	1 cut(s)	583
PkrI	GCNGC	2 cut(s)	436, 514
PleI	GAGTC	1 cut(s)	564
PpsI	GAGTC	1 cut(s)	564
PscI	ACATGT	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PsuI	RGATCY	2 cut(s)	389, 580
RsaI	GTAC	2 cut(s)	5, 56
RsaNI	GTAC	2 cut(s)	4, 55
SatI	GCNGC	2 cut(s)	435, 513
Sau3AI	GATC	4 cut(s)	87, 169, 389, 580
SchI	GAGTC	1 cut(s)	564
ScrFI	CCNGG	1 cut(s)	585
SduI	GDGCHC	1 cut(s)	288
SfaNI	GCATC	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	2 cut(s)	461, 466
SsiI	CCGC	1 cut(s)	316
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	4 cut(s)	9, 176, 185, 276
StyD4I	CCNGG	1 cut(s)	583
StyI	CCWWGG	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	500
TaqII	GACCGA	1 cut(s)	261
TasI	AATT	2 cut(s)	461, 466
TatI	WGTACW	2 cut(s)	3, 54
TfiI	GAWTC	1 cut(s)	604
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	434, 512
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	3 cut(s)	266, 380, 572
XapI	RAATTY	1 cut(s)	466
XceI	RCATGY	1 cut(s)	443
XmaJI	CCTAGG	1 cut(s)	275
XspI	CTAG	4 cut(s)	9, 176, 185, 276
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.