RchiOBHm_Chr1g0343761

Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029575
Physical Location & Seq
Reverse (-)
36072426 .. 36073316
891 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 612 bp
ATGACTTCAAGGTTACTTCATTCAGCAGTAAAAAAATGGTTAATCTGTGATGTGTCTTTGCTCAGTTTGTTATTTCCCTCCCCCAGGCCCTGCTACTTGACAAGCATCATCTTTTCATTTCTTTATGTTTTTTGTAGTTGTTTTAAGGCTGGCCTGAATCACTTCCCATTATGTTGTGGCAGTAAATGTTCTCTAGCATTTGTCGCTCCTCTCGAAGCAATTCTATTTGATATAGATGGAACATTGTGTGATTCAGATCCGCTCCATTATTATGCTTTCTGTGAAATGCTTCAAGAAGTAGGTTTTAATGGTGGGGTTCCTATCACTGAGGAATTCTTCATTGAGAATATCAGTGGGATGCATAATGAGGAGCTCTGTGGTGTTCTCTTTCCTGATTGGGATCTCCAAAGAGCAAGAAAATTTTTTGAAGATAAGGAAGACATGTTTCGAAGTTCTATTTTCTTTTTTCTTTTCTTAAATTGTAAAGAGGTAAGCACTGGGGTGAGGACCCTATCTATTATTTGCACAATAACTTCATCCATTTCAGTTTCTCTATTCCAAAGACTCATTCTGACAAGATTAATGGAGTGGTATATGCAGATTGGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HAD_2

Protein Analysis

203

Amino Acids

23.23

Weight (kDa)

5.17

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029575)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0343761
rosa_multiflora Rmu_sc0007032.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 262
AciI CCGC 1 cut(s) 260
AclWI GGATC 2 cut(s) 251, 408
AcsI RAATTY 2 cut(s) 332, 419
AfiI CCNNNNNNNGG 1 cut(s) 84
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 3 cut(s) 9, 293, 428
AjnI CCWGG 1 cut(s) 83
AjuI GAANNNNNNNTTGG 2 cut(s) 552, 584
AleI CACNNNNGTG 1 cut(s) 500
AluBI AGCT 1 cut(s) 373
AluI AGCT 1 cut(s) 373
Alw21I GWGCWC 1 cut(s) 375
AlwI GGATC 2 cut(s) 251, 408
AlwNI CAGNNNCTG 1 cut(s) 90
AoxI GGCC 2 cut(s) 86, 151
ApoI RAATTY 2 cut(s) 332, 419
AseI ATTAAT 1 cut(s) 581
Asp700I GAANNNNTTC 3 cut(s) 161, 219, 288
AspS9I GGNCC 2 cut(s) 87, 507
AsuHPI GGTGA 1 cut(s) 514
AsuII TTCGAA 1 cut(s) 448
AvaII GGWCC 1 cut(s) 507
BanII GRGCYC 1 cut(s) 375
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 375
BccI CCATC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 85
BfaI CTAG 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 85
Bme18I GGWCC 1 cut(s) 507
BmgT120I GGNCC 2 cut(s) 87, 507
BmiI GGNNCC 2 cut(s) 318, 509
BmrFI CCNGG 1 cut(s) 85
BmrI ACTGGG 1 cut(s) 507
BmsI GCATC 2 cut(s) 114, 348
BmuI ACTGGG 1 cut(s) 507
BpiI GAAGAC 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 448
BsaBI GATNNNNATC 3 cut(s) 255, 399, 605
BsaJI CCNNGG 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 502
Bse8I GATNNNNATC 3 cut(s) 255, 399, 605
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 2 cut(s) 363, 536
BseJI GATNNNNATC 3 cut(s) 255, 399, 605
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 76, 318
BseNI ACTGG 1 cut(s) 502
BseRI GAGGAG 2 cut(s) 198, 383
BshFI GGCC 2 cut(s) 88, 153
BsiHKAI GWGCWC 1 cut(s) 375
BslI CCNNNNNNNGG 1 cut(s) 84
BsnI GGCC 2 cut(s) 88, 153
Bsp119I TTCGAA 1 cut(s) 448
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 2 cut(s) 256, 400
BspACI CCGC 1 cut(s) 260
BspANI GGCC 2 cut(s) 88, 153
BspCNI CTCAG 2 cut(s) 75, 319
BspLI GGNNCC 2 cut(s) 318, 509
BspPI GGATC 2 cut(s) 251, 408
BspT104I TTCGAA 1 cut(s) 448
BsrBI CCGCTC 1 cut(s) 262
BsrI ACTGG 1 cut(s) 502
BssECI CCNNGG 1 cut(s) 83
BssMI GATC 2 cut(s) 256, 400
Bst2UI CCWGG 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 448
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 2 cut(s) 62, 327
BstENI CCTNNNNNAGG 1 cut(s) 82
BstF5I GGATG 2 cut(s) 363, 536
BstKTI GATC 2 cut(s) 259, 403
BstMBI GATC 2 cut(s) 256, 400
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 85
BstNSI RCATGY 1 cut(s) 445
BstSCI CCNGG 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 2 cut(s) 256, 400
BstYI RGATCY 2 cut(s) 256, 400
BsuRI GGCC 2 cut(s) 88, 153
BtsCI GGATG 2 cut(s) 363, 536
BtsIMutI CAGTG 3 cut(s) 324, 358, 495
Cac8I GCNNGC 1 cut(s) 151
CaiI CAGNNNCTG 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 87, 507
CviAII CATG 1 cut(s) 442
CviJI RGCY 4 cut(s) 88, 149, 153, 373
CviKI_1 RGCY 4 cut(s) 88, 149, 153, 373
DdeI CTNAG 2 cut(s) 62, 327
DpnI GATC 2 cut(s) 258, 402
DpnII GATC 2 cut(s) 256, 400
Ecl136II GAGCTC 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 507
Eco53kI GAGCTC 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 373
EcoNI CCTNNNNNAGG 1 cut(s) 82
EcoO109I RGGNCCY 2 cut(s) 87, 507
EcoRI GAATTC 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 83
EcoT22I ATGCAT 1 cut(s) 363
EcoT38I GRGCYC 1 cut(s) 375
FaeI CATG 1 cut(s) 445
FaiI YATR 8 cut(s) 126, 172, 233, 273, 363, 443, 594, 596
FatI CATG 1 cut(s) 441
FokI GGATG 2 cut(s) 370, 523
FriOI GRGCYC 1 cut(s) 375
FspBI CTAG 1 cut(s) 194
HaeIII GGCC 2 cut(s) 88, 153
Hin1II CATG 1 cut(s) 445
HinfI GANTC 3 cut(s) 157, 251, 564
HphI GGTGA 1 cut(s) 514
Hpy188I TCNGA 3 cut(s) 256, 573, 611
Hpy188III TCNNGA 3 cut(s) 212, 293, 392
HpyCH4V TGCA 3 cut(s) 361, 525, 598
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 2 cut(s) 62, 327
Hsp92II CATG 1 cut(s) 445
Kzo9I GATC 2 cut(s) 256, 400
LmnI GCTCC 3 cut(s) 211, 267, 370
LpnPI CCDG 7 cut(s) 70, 97, 103, 135, 167, 405, 483
LweI GCATC 2 cut(s) 114, 348
MaeI CTAG 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 12
MalI GATC 2 cut(s) 258, 402
MbiI CCGCTC 1 cut(s) 262
MboI GATC 2 cut(s) 256, 400
MboII GAAGA 3 cut(s) 328, 440, 449
MflI RGATCY 2 cut(s) 256, 400
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 4 cut(s) 219, 332, 419, 478
MlyI GAGTC 1 cut(s) 558
MnlI CCTC 6 cut(s) 88, 219, 322, 361, 481, 498
Mph1103I ATGCAT 1 cut(s) 363
MroXI GAANNNNTTC 3 cut(s) 161, 219, 288
MseI TTAA 5 cut(s) 41, 144, 306, 476, 581
MslI CAYNNNNRTG 2 cut(s) 270, 500
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 2 cut(s) 256, 400
NlaIII CATG 1 cut(s) 445
NlaIV GGNNCC 2 cut(s) 318, 509
NsiI ATGCAT 1 cut(s) 363
NspI RCATGY 1 cut(s) 445
NspV TTCGAA 1 cut(s) 448
OliI CACNNNNGTG 1 cut(s) 500
PciI ACATGT 1 cut(s) 441
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 3 cut(s) 161, 219, 288
PfeI GAWTC 2 cut(s) 157, 251
PleI GAGTC 1 cut(s) 558
PpsI GAGTC 1 cut(s) 558
PpuMI RGGWCCY 1 cut(s) 507
PscI ACATGT 1 cut(s) 441
PshBI ATTAAT 1 cut(s) 581
Psp124BI GAGCTC 1 cut(s) 375
Psp5II RGGWCCY 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 2 cut(s) 318, 509
PspPI GGNCC 2 cut(s) 87, 507
PspPPI RGGWCCY 1 cut(s) 507
PstNI CAGNNNCTG 1 cut(s) 90
PsuI RGATCY 2 cut(s) 256, 400
RseI CAYNNNNRTG 2 cut(s) 270, 500
SacI GAGCTC 1 cut(s) 375
SaqAI TTAA 5 cut(s) 41, 144, 306, 476, 581
Sau3AI GATC 2 cut(s) 256, 400
Sau96I GGNCC 2 cut(s) 87, 507
SchI GAGTC 1 cut(s) 558
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 1 cut(s) 375
SetI ASST 4 cut(s) 14, 304, 375, 492
SfaNI GCATC 2 cut(s) 114, 348
SfuI TTCGAA 1 cut(s) 448
SinI GGWCC 1 cut(s) 507
SmiMI CAYNNNNRTG 2 cut(s) 270, 500
Sse9I AATT 4 cut(s) 219, 332, 419, 478
SsiI CCGC 1 cut(s) 260
SspMI CTAG 1 cut(s) 194
SstI GAGCTC 1 cut(s) 375
StyD4I CCNGG 1 cut(s) 83
TaqI TCGA 2 cut(s) 213, 448
TasI AATT 4 cut(s) 219, 332, 419, 478
TfiI GAWTC 2 cut(s) 157, 251
Tru1I TTAA 5 cut(s) 41, 144, 306, 476, 581
Tru9I TTAA 5 cut(s) 41, 144, 306, 476, 581
TscAI CASTG 3 cut(s) 331, 358, 502
TspDTI ATGAA 4 cut(s) 8, 105, 328, 525
TspRI CASTG 3 cut(s) 331, 358, 502
VpaK11BI GGWCC 1 cut(s) 507
VspI ATTAAT 1 cut(s) 581
XagI CCTNNNNNAGG 1 cut(s) 82
XapI RAATTY 2 cut(s) 332, 419
XceI RCATGY 1 cut(s) 445
XmnI GAANNNNTTC 3 cut(s) 161, 219, 288
XspI CTAG 1 cut(s) 194
Zsp2I ATGCAT 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.