Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029651

Physical Location & Seq

Genomic Coordinates Forward (+)

43209865 .. 43210899

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTCTGGGCGTGGAAATGGAGGCAAGGTTTTGGGTAAGGGAGGAGCAAAACGACATCGTAAGGTCTTCCGCGATAGCATCAAGGGCACCAAGCTGTCGACGGCGAGGAGAAGGAGAATACATCACACCGGGAATTTGGTGGGCGGGACACAGTTTCATTCGAGCGGCAATAGGGGGACATGGATCAGTTCACTCAGACCAGGTGTTATATTATTCAGTATCGAATTGTTATGCACACAAGGTGTTCGACAAAATGATTCTAAATTGCTTTCTTTTGAGTTTAAGACTTTGGGTTTAACCTACAGCAGGTTTTGGTCTTTTTGTCTTATGCCACTAGTGATTGATCTTAATTACCAGTTACTAAAGTATTTGGGTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

126

Amino Acids

14.09

Weight (kDa)

11.22

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029651)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0350121
rosa_roxburghii	Rroxscaffold_177G00434240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	297
AccB1I	GGYRCC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	165
AccI	GTMKAC	1 cut(s)	98
AccII	CGCG	1 cut(s)	72
AciI	CCGC	3 cut(s)	70, 144, 165
AclWI	GGATC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	133
AdeI	CACNNNGTG	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	306
AhlI	ACTAGT	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	2 cut(s)	94, 378
AluI	AGCT	2 cut(s)	94, 378
AlwI	GGATC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	133
AsuC2I	CCSGG	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	130
BcuI	ACTAGT	1 cut(s)	334
BfaI	CTAG	2 cut(s)	335, 379
BfmI	CTRYAG	1 cut(s)	301
BfuAI	ACCTGC	1 cut(s)	297
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
Bme1390I	CCNGG	2 cut(s)	130, 201
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	130, 201
BmsI	GCATC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	2 cut(s)	57, 121
BseSI	GKGCMC	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	2 cut(s)	160, 190
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmFI	GGGAC	2 cut(s)	160, 190
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	183, 343
BspACI	CCGC	3 cut(s)	70, 144, 165
BspCNI	CTCAG	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	355
BssMI	GATC	2 cut(s)	183, 343
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	194
BstENI	CCTNNNNNAGG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	2 cut(s)	186, 346
BstMBI	GATC	2 cut(s)	183, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	128, 199
BstSFI	CTRYAG	1 cut(s)	301
BstSLI	GKGCMC	1 cut(s)	89
BstUI	CGCG	1 cut(s)	72
BstV2I	GAAGAC	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	297
CsiI	ACCWGGT	1 cut(s)	199
CviAII	CATG	1 cut(s)	180
CviJI	RGCY	2 cut(s)	94, 378
CviKI_1	RGCY	2 cut(s)	94, 378
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	2 cut(s)	185, 345
DpnII	GATC	2 cut(s)	183, 343
DraIII	CACNNNGTG	1 cut(s)	242
EcoNI	CCTNNNNNAGG	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	199
FaeI	CATG	1 cut(s)	183
FaiI	YATR	4 cut(s)	181, 209, 232, 329
FaqI	GGGAC	2 cut(s)	160, 190
FatI	CATG	1 cut(s)	179
FauI	CCCGC	1 cut(s)	137
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	2 cut(s)	335, 379
GluI	GCNGC	1 cut(s)	166
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	1 cut(s)	183
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	1 cut(s)	129
Hpy166II	GTNNAC	2 cut(s)	99, 191
Hpy188I	TCNGA	1 cut(s)	197
Hpy8I	GTNNAC	2 cut(s)	99, 191
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	1 cut(s)	183
Kzo9I	GATC	2 cut(s)	183, 343
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	5 cut(s)	142, 186, 213, 292, 368
LweI	GCATC	1 cut(s)	87
MabI	ACCWGGT	1 cut(s)	199
MaeI	CTAG	2 cut(s)	335, 379
MaeIII	GTNAC	1 cut(s)	357
MalI	GATC	2 cut(s)	185, 345
MbiI	CCGCTC	1 cut(s)	165
MboI	GATC	2 cut(s)	183, 343
MboII	GAAGA	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	4 cut(s)	133, 224, 263, 349
MnlI	CCTC	3 cut(s)	14, 35, 99
MseI	TTAA	3 cut(s)	282, 296, 348
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	130, 201
MvaI	CCWGG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	84
NciI	CCSGG	1 cut(s)	130
NdeII	GATC	2 cut(s)	183, 343
NlaIII	CATG	1 cut(s)	183
NlaIV	GGNNCC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	88
SalI	GTCGAC	1 cut(s)	97
SaqAI	TTAA	3 cut(s)	282, 296, 348
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	2 cut(s)	183, 343
ScrFI	CCNGG	2 cut(s)	130, 201
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	8 cut(s)	30, 66, 96, 205, 244, 302, 311, 380
SexAI	ACCWGGT	1 cut(s)	199
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	301
SpeI	ACTAGT	1 cut(s)	334
Sse9I	AATT	4 cut(s)	133, 224, 263, 349
SsiI	CCGC	3 cut(s)	70, 144, 165
SspMI	CTAG	2 cut(s)	335, 379
StyD4I	CCNGG	2 cut(s)	128, 199
TaaI	ACNGT	1 cut(s)	153
TaqI	TCGA	4 cut(s)	98, 161, 222, 247
TasI	AATT	4 cut(s)	133, 224, 263, 349
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	3 cut(s)	282, 296, 348
Tru9I	TTAA	3 cut(s)	282, 296, 348
TspDTI	ATGAA	1 cut(s)	146
XagI	CCTNNNNNAGG	1 cut(s)	304
XapI	RAATTY	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	98
XspI	CTAG	2 cut(s)	335, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.