Rroxscaffold_177G00434240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000177
OG0029651
Physical Location & Seq
Forward (+)
186240 .. 188070
1831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_177G00434240.1

Sequence Viewer

Length: 297 bp
ATGCGCTTATATACGCCATATGGAAAAATTGGCATGGTTCGTGGTCGATATGACATCGGTTCACCAAATGTACATCACACCGGGAATTTGGTGGGCGGGACACAGTTTCATTCGAGCGGCAATAGGGGGACATGGATCAGTTCACTTAGACCAGGTGTTATATTATTCAGTATCGAATTGTTACGCACACAAGGTGTTCGACAAAATGATTCTAAATTGCTTTCTTTTGAGTTTAAGACTTTTGGGTTTAACCTACAGCTGGTTTTGGTCTTTTTGTCTTATGGCACTAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.95

Weight (kDa)

10.1

Isoelectric Point (pI)

22.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0029651)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0350121
rosa_roxburghii Rroxscaffold_177G00434240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 117
AciI CCGC 2 cut(s) 96, 117
AclWI GGATC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 85
AdeI CACNNNGTG 1 cut(s) 194
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 259
AhlI ACTAGT 1 cut(s) 287
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
AlwI GGATC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 85
AspLEI GCGC 1 cut(s) 6
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 153
BcnI CCSGG 1 cut(s) 82
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 254
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
Bme1390I CCNGG 2 cut(s) 82, 153
BmrFI CCNGG 2 cut(s) 82, 153
BpuMI CCSGG 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 259
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 2 cut(s) 112, 142
BslI CCNNNNNNNGG 1 cut(s) 259
BsmFI GGGAC 2 cut(s) 112, 142
Bsp1407I TGTACA 1 cut(s) 70
Bsp143I GATC 1 cut(s) 135
BspACI CCGC 2 cut(s) 96, 117
BspPI GGATC 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 117
BsrGI TGTACA 1 cut(s) 70
BssMI GATC 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 146
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 138
BstMBI GATC 1 cut(s) 135
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 2 cut(s) 80, 151
BstSFI CTRYAG 1 cut(s) 254
CfoI GCGC 1 cut(s) 6
CsiI ACCWGGT 1 cut(s) 151
Csp6I GTAC 1 cut(s) 71
CviAII CATG 2 cut(s) 34, 132
CviJI RGCY 1 cut(s) 259
CviKI_1 RGCY 1 cut(s) 259
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 1 cut(s) 146
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
DraIII CACNNNGTG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 2 cut(s) 37, 135
FaiI YATR 9 cut(s) 10, 12, 19, 21, 35, 51, 133, 161, 282
FaqI GGGAC 2 cut(s) 112, 142
FatI CATG 2 cut(s) 33, 131
FauI CCCGC 1 cut(s) 89
FauNDI CATATG 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 118
FspBI CTAG 1 cut(s) 288
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 118
HapII CCGG 1 cut(s) 81
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 37, 135
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 209
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 54
Hpy166II GTNNAC 2 cut(s) 62, 143
Hpy8I GTNNAC 2 cut(s) 62, 143
HpyCH4III ACNGT 1 cut(s) 105
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 2 cut(s) 37, 135
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 1 cut(s) 135
LpnPI CCDG 4 cut(s) 94, 138, 165, 245
MabI ACCWGGT 1 cut(s) 151
MaeI CTAG 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 180
MalI GATC 1 cut(s) 137
MbiI CCGCTC 1 cut(s) 117
MboI GATC 1 cut(s) 135
MluCI AATT 4 cut(s) 27, 85, 176, 215
MseI TTAA 2 cut(s) 234, 249
MspA1I CMGCKG 1 cut(s) 259
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 2 cut(s) 82, 153
MvaI CCWGG 1 cut(s) 153
NciI CCSGG 1 cut(s) 82
NdeI CATATG 1 cut(s) 19
NdeII GATC 1 cut(s) 135
NlaIII CATG 2 cut(s) 37, 135
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 259
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 234, 249
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 1 cut(s) 135
ScrFI CCNGG 2 cut(s) 82, 153
SetI ASST 4 cut(s) 157, 196, 255, 261
SexAI ACCWGGT 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 254
SpeI ACTAGT 1 cut(s) 287
Sse9I AATT 4 cut(s) 27, 85, 176, 215
SsiI CCGC 2 cut(s) 96, 117
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 2 cut(s) 80, 151
TaaI ACNGT 1 cut(s) 105
TaqI TCGA 4 cut(s) 46, 113, 174, 199
TasI AATT 4 cut(s) 27, 85, 176, 215
TatI WGTACW 1 cut(s) 70
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 2 cut(s) 234, 249
Tru9I TTAA 2 cut(s) 234, 249
TspDTI ATGAA 1 cut(s) 98
XapI RAATTY 1 cut(s) 85
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.