RchiOBHm_Chr1g0351291

ABC transporter B family member 26, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029592
Physical Location & Seq
Forward (+)
44593588 .. 44594663
1076 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
ATGTTTATTCATAGACTCAGATCTTTTGTTTTCAATACATTTATGATTAAATGGATTTCCCATATACATTCAGGTGTGAAGTTGCAGAGGGTAATGGGACATATTCAGTTCATTAATATTGATGGTATCCCTATCAGAGAGTTGGATATCAGGTGGCTGAGAGGGAAAGTTGGATTTGTGTTGCAGGAACCAAATCTATTTCACATGACCATCAAGTCAAACATTAAATATGGTTGCTCCGATGATATTAAGGAGGAAGATATAAAATCGGCTGCAAAGCTAGCTTATGCTCATAACTTCATCTCATCTCTTCCTGACGGATATGATACCCTAGTCGATGATAACTTACTTGGCGGTGGACAAAAGCAGTGGATTGCGATTGCTAGTGCCATTCTTAGAGACCCAGCTATATTAATCCTTGATGAAGCTACCAGTGCCTTAGACTCTGAAGCCGAACATCACATTAAGGCATGTTCATTCAAAACTAGAAGAATCTTCCCATTTTATTCCACAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04142 map02010 map04142
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

172

Amino Acids

19.66

Weight (kDa)

8.54

Isoelectric Point (pI)

56.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 38 - 145 3.3e-12 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029592)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0351291 RchiOBHm_Chr7g0219931

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 214
AciI CCGC 1 cut(s) 354
AcuI CTGAAG 1 cut(s) 468
AgsI TTSAA 2 cut(s) 34, 481
AluBI AGCT 4 cut(s) 280, 284, 407, 428
AluI AGCT 4 cut(s) 280, 284, 407, 428
Alw26I GTCTC 1 cut(s) 393
ApeKI GCWGC 1 cut(s) 272
AseI ATTAAT 2 cut(s) 114, 413
AsuNHI GCTAGC 1 cut(s) 280
BaeI ACNNNNGTAYC 2 cut(s) 318, 351
BbvI GCAGC 1 cut(s) 259
BccI CCATC 2 cut(s) 116, 218
BciVI GTATCC 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 393
BfaI CTAG 4 cut(s) 281, 332, 384, 486
BfuI GTATCC 1 cut(s) 137
BglII AGATCT 1 cut(s) 20
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 189
BmtI GCTAGC 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 393
Bse1I ACTGG 1 cut(s) 432
BseMII CTCAG 2 cut(s) 31, 149
BseNI ACTGG 1 cut(s) 432
BseXI GCAGC 1 cut(s) 259
BseYI CCCAGC 1 cut(s) 403
BslFI GGGAC 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 393
BsmFI GGGAC 1 cut(s) 111
Bso31I GGTCTC 1 cut(s) 393
Bsp143I GATC 1 cut(s) 20
BspACI CCGC 1 cut(s) 354
BspCNI CTCAG 2 cut(s) 30, 150
BspLI GGNNCC 1 cut(s) 189
BspOI GCTAGC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 393
BsrI ACTGG 1 cut(s) 432
BssMI GATC 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 4 cut(s) 17, 158, 395, 439
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 2 cut(s) 281, 434
BstNSI RCATGY 1 cut(s) 474
BstV1I GCAGC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuI GTATCC 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 374
BtsIMutI CAGTG 2 cut(s) 374, 439
Cac8I GCNNGC 1 cut(s) 282
CspCI CAANNNNNGTGG 2 cut(s) 350, 385
CviAII CATG 2 cut(s) 205, 471
CviJI RGCY 7 cut(s) 157, 272, 280, 284, 407, 428, 452
CviKI_1 RGCY 7 cut(s) 157, 272, 280, 284, 407, 428, 452
DdeI CTNAG 4 cut(s) 17, 158, 395, 439
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
DrdI GACNNNNNNGTC 1 cut(s) 214
DseDI GACNNNNNNGTC 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 393
Eco32I GATATC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 468
EcoRV GATATC 1 cut(s) 148
FaeI CATG 2 cut(s) 208, 474
FaqI GGGAC 1 cut(s) 111
FatI CATG 2 cut(s) 204, 470
Fnu4HI GCNGC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 4 cut(s) 281, 332, 384, 486
GluI GCNGC 1 cut(s) 273
GsaI CCCAGC 1 cut(s) 407
Hin1II CATG 2 cut(s) 208, 474
HinfI GANTC 3 cut(s) 15, 443, 492
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 4 cut(s) 20, 137, 241, 448
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 1 cut(s) 359
HpyCH4V TGCA 3 cut(s) 85, 184, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 434
HpyF3I CTNAG 4 cut(s) 17, 158, 395, 439
Hsp92II CATG 2 cut(s) 208, 474
Kzo9I GATC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 6 cut(s) 57, 136, 170, 327, 417, 445
Lsp1109I GCAGC 1 cut(s) 259
MaeI CTAG 4 cut(s) 281, 332, 384, 486
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 4 cut(s) 269, 302, 487, 501
MflI RGATCY 1 cut(s) 20
MlyI GAGTC 2 cut(s) 9, 437
MmeI TCCRAC 2 cut(s) 123, 151
MnlI CCTC 3 cut(s) 81, 155, 247
MseI TTAA 6 cut(s) 48, 114, 225, 249, 413, 465
MslI CAYNNNNRTG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 281, 434
NdeII GATC 1 cut(s) 20
NheI GCTAGC 1 cut(s) 280
NlaIII CATG 2 cut(s) 208, 474
NlaIV GGNNCC 1 cut(s) 189
NspI RCATGY 1 cut(s) 474
PfeI GAWTC 1 cut(s) 492
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 2 cut(s) 9, 437
PpsI GAGTC 2 cut(s) 9, 437
PshBI ATTAAT 2 cut(s) 114, 413
PspFI CCCAGC 1 cut(s) 403
PspN4I GGNNCC 1 cut(s) 189
PsuI RGATCY 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 6 cut(s) 48, 114, 225, 249, 413, 465
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 1 cut(s) 20
SchI GAGTC 2 cut(s) 9, 437
SetI ASST 6 cut(s) 76, 155, 282, 286, 409, 430
SmiMI CAYNNNNRTG 1 cut(s) 72
SsiI CCGC 1 cut(s) 354
SspI AATATT 1 cut(s) 118
SspMI CTAG 4 cut(s) 281, 332, 384, 486
TaqI TCGA 1 cut(s) 336
TfiI GAWTC 1 cut(s) 492
Tru1I TTAA 6 cut(s) 48, 114, 225, 249, 413, 465
Tru9I TTAA 6 cut(s) 48, 114, 225, 249, 413, 465
TscAI CASTG 2 cut(s) 374, 439
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 4 cut(s) 100, 289, 438, 465
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 2 cut(s) 374, 439
VspI ATTAAT 2 cut(s) 114, 413
XceI RCATGY 1 cut(s) 474
XspI CTAG 4 cut(s) 281, 332, 384, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.