RchiOBHm_Chr7g0219931

ABC transporter B family member 26, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0029592
Physical Location & Seq
Reverse (-)
38653789 .. 38654722
934 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19685

Sequence Viewer

Length: 399 bp
ATGGGACATATTCAGTTCGTAAACGTTTCTTTTCACTATCCTTCTAGGGCAAAATATCCCTATCAGAGAGTTGGATTCAGCCTGAGAGGGAAAGTTGGATTTTTGTCGCAGGAACCAAATCTATTTCACATGACCATCAAGTCAAACATTAAATATGGTTGGTCCGATGATATTAAGGAGGAAGATATAAAATCGGCTGCAAAGCTAGCATATGCTCATAACTTCATCTCATCTCTTCCTGACGGATATGATACCCTAGTCGATGATAACTTACTCACCGGTGGACAAAAGCAGCGGATTGCGATTGCTAGTGCCATTCTTAGAGACCCAGCTATATTAATCCTTGATGAAGCTACTAGTGCCTTAGACTCTGAAGCCGAACATCAAGTGGTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04142 map02010 map04142
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

132

Amino Acids

14.79

Weight (kDa)

5.9

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 27 - 120 4.1e-12 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029592)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0351291 RchiOBHm_Chr7g0219931

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 139
AciI CCGC 1 cut(s) 295
AclI AACGTT 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 393
AgeI ACCGGT 1 cut(s) 278
AhlI ACTAGT 1 cut(s) 356
AluBI AGCT 3 cut(s) 205, 332, 353
AluI AGCT 3 cut(s) 205, 332, 353
Alw26I GTCTC 1 cut(s) 318
ApeKI GCWGC 2 cut(s) 197, 292
AseI ATTAAT 1 cut(s) 338
AsiGI ACCGGT 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 268
AsuNHI GCTAGC 1 cut(s) 205
AvaII GGWCC 1 cut(s) 162
BaeI ACNNNNGTAYC 2 cut(s) 243, 276
BbvI GCAGC 2 cut(s) 184, 304
BccI CCATC 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 318
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 5 cut(s) 45, 206, 257, 309, 357
BisI GCNGC 2 cut(s) 198, 293
BlsI GCNGC 2 cut(s) 199, 294
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 114
BmtI GCTAGC 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 318
BsaWI WCCGGW 1 cut(s) 278
Bse118I RCCGGY 1 cut(s) 278
BseMII CTCAG 1 cut(s) 74
BseXI GCAGC 2 cut(s) 184, 304
BseYI CCCAGC 1 cut(s) 328
BshTI ACCGGT 1 cut(s) 278
BsiSI CCGG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 18
Bso31I GGTCTC 1 cut(s) 318
BspACI CCGC 1 cut(s) 295
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 114
BspOI GCTAGC 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 3 cut(s) 83, 320, 364
BstMAI GTCTC 1 cut(s) 318
BstMWI GCNNNNNNNGC 2 cut(s) 206, 359
BstV1I GCAGC 2 cut(s) 184, 304
Cac8I GCNNGC 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 162
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 1 cut(s) 130
CviJI RGCY 6 cut(s) 81, 197, 205, 332, 353, 377
CviKI_1 RGCY 6 cut(s) 81, 197, 205, 332, 353, 377
DdeI CTNAG 3 cut(s) 83, 320, 364
DrdI GACNNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 393
FaeI CATG 1 cut(s) 133
FaiI YATR 9 cut(s) 9, 131, 156, 188, 211, 213, 219, 249, 335
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 129
FauNDI CATATG 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 198, 293
Fsp4HI GCNGC 2 cut(s) 198, 293
FspBI CTAG 5 cut(s) 45, 206, 257, 309, 357
GluI GCNGC 2 cut(s) 198, 293
GsaI CCCAGC 1 cut(s) 332
HapII CCGG 1 cut(s) 279
Hin1II CATG 1 cut(s) 133
HinfI GANTC 2 cut(s) 75, 368
HpaII CCGG 1 cut(s) 279
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 22, 284
Hpy188I TCNGA 3 cut(s) 66, 166, 373
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 2 cut(s) 22, 284
HpyAV CCTTC 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 359
HpyF3I CTNAG 3 cut(s) 83, 320, 364
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 1 cut(s) 133
LpnPI CCDG 5 cut(s) 95, 95, 252, 292, 342
Lsp1109I GCAGC 2 cut(s) 184, 304
MaeI CTAG 5 cut(s) 45, 206, 257, 309, 357
MaeII ACGT 1 cut(s) 24
MboII GAAGA 2 cut(s) 194, 227
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 2 cut(s) 52, 76
MnlI CCTC 2 cut(s) 80, 172
MseI TTAA 4 cut(s) 150, 174, 338, 397
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 206, 359
NdeI CATATG 1 cut(s) 211
NheI GCTAGC 1 cut(s) 205
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 75
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 2 cut(s) 199, 294
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PshBI ATTAAT 1 cut(s) 338
Psp1406I AACGTT 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 162
SaqAI TTAA 4 cut(s) 150, 174, 338, 397
SatI GCNGC 2 cut(s) 198, 293
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 1 cut(s) 362
SetI ASST 4 cut(s) 27, 207, 334, 355
SgrAI CRCCGGYG 1 cut(s) 278
SinI GGWCC 1 cut(s) 162
SpeI ACTAGT 1 cut(s) 356
SsiI CCGC 1 cut(s) 295
SspMI CTAG 5 cut(s) 45, 206, 257, 309, 357
TaiI ACGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 261
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 4 cut(s) 150, 174, 338, 397
Tru9I TTAA 4 cut(s) 150, 174, 338, 397
TseI GCWGC 2 cut(s) 197, 292
TspDTI ATGAA 2 cut(s) 214, 363
TspGWI ACGGA 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 162
VspI ATTAAT 1 cut(s) 338
XspI CTAG 5 cut(s) 45, 206, 257, 309, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.