Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029616

Physical Location & Seq

Genomic Coordinates Reverse (-)

47983411 .. 47984124

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCTACACAACTTCTTGAAGCTCAACGCTCTGCAACGATACTTCGGAATCATTAACCAGTGTACCCAATCCCACTTTGCAGATAGCTGGGAAAACGAAAACGACATTCATGCCCTAGAACTCGCCAAGAACTACACCTTCAAGCTTGCTGCACGCTTGTTTGTTAGCCTTGAAGATAAGGCGGACATTGAAAAACTCAGCAAACCATTCCGTGCAGTGAATGCCGGAACCATATCGCTGCCCATTGACTTCCCCGGAACTCTGTTGAGTAAAGTCATCAAGGCCGCCAACTTGATTAGGAAGGATTTGTACAAGATGATCAAGCAGATCGAGGAAGGTCGACTTAGCAGACGGCAATGCATCCCACACACAAGACATGTTATCACACATGCTCTTGACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

134

Amino Acids

15.41

Weight (kDa)

9.36

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355321
rosa_samantha	Rh1CG242700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	340
AciI	CCGC	2 cut(s)	182, 285
AfaI	GTAC	2 cut(s)	64, 311
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	4 cut(s)	19, 142, 173, 191
AluBI	AGCT	3 cut(s)	22, 87, 145
AluI	AGCT	3 cut(s)	22, 87, 145
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	149, 238
AsuC2I	CCSGG	1 cut(s)	255
BaeI	ACNNNNGTAYC	2 cut(s)	46, 79
BarI	GAAGNNNNNNTAC	2 cut(s)	293, 325
BbvI	GCAGC	2 cut(s)	136, 225
BceAI	ACGGC	1 cut(s)	368
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BclI	TGATCA	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	255
BfaI	CTAG	1 cut(s)	116
BisI	GCNGC	3 cut(s)	150, 239, 285
BlsI	GCNGC	3 cut(s)	151, 240, 286
Bme1390I	CCNGG	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	360
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	136, 225
BseYI	CCCAGC	1 cut(s)	87
BsgI	GTGCAG	2 cut(s)	135, 234
BshFI	GGCC	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	225, 255
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	284
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	318, 327
BspACI	CCGC	2 cut(s)	182, 285
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	362
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	2 cut(s)	318, 327
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstAUI	TGTACA	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	147, 154
BstDEI	CTNAG	2 cut(s)	197, 344
BstF5I	GGATG	1 cut(s)	360
BstKTI	GATC	2 cut(s)	321, 330
BstMBI	GATC	2 cut(s)	318, 327
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNSI	RCATGY	2 cut(s)	380, 392
BstSCI	CCNGG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	136, 225
BsuRI	GGCC	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	360
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	65, 222
Cac8I	GCNNGC	2 cut(s)	147, 154
Csp6I	GTAC	2 cut(s)	63, 310
CviAII	CATG	3 cut(s)	110, 377, 389
CviJI	RGCY	5 cut(s)	22, 87, 145, 168, 284
CviKI_1	RGCY	5 cut(s)	22, 87, 145, 168, 284
CviQI	GTAC	2 cut(s)	63, 310
DdeI	CTNAG	2 cut(s)	197, 344
DpnI	GATC	2 cut(s)	320, 329
DpnII	GATC	2 cut(s)	318, 327
EciI	GGCGGA	1 cut(s)	197
EcoT22I	ATGCAT	1 cut(s)	362
FaeI	CATG	3 cut(s)	113, 380, 392
FaiI	YATR	4 cut(s)	111, 233, 378, 390
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FatI	CATG	3 cut(s)	109, 376, 388
FbaI	TGATCA	1 cut(s)	318
FblI	GTMKAC	1 cut(s)	340
Fnu4HI	GCNGC	3 cut(s)	150, 239, 285
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	3 cut(s)	150, 239, 285
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	3 cut(s)	150, 239, 285
GsaI	CCCAGC	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	2 cut(s)	225, 255
Hin1II	CATG	3 cut(s)	113, 380, 392
HincII	GTYRAC	1 cut(s)	341
HindII	GTYRAC	1 cut(s)	341
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	2 cut(s)	225, 255
Hpy166II	GTNNAC	2 cut(s)	63, 341
Hpy188I	TCNGA	2 cut(s)	47, 404
Hpy188III	TCNNGA	2 cut(s)	16, 395
Hpy8I	GTNNAC	2 cut(s)	63, 341
HpyAV	CCTTC	3 cut(s)	148, 295, 329
HpyCH4V	TGCA	5 cut(s)	34, 80, 152, 215, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	2 cut(s)	197, 344
Hsp92II	CATG	3 cut(s)	113, 380, 392
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	2 cut(s)	318, 327
LpnPI	CCDG	4 cut(s)	71, 73, 238, 268
Lsp1109I	GCAGC	2 cut(s)	136, 225
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	1 cut(s)	116
MalI	GATC	2 cut(s)	320, 329
MboI	GATC	2 cut(s)	318, 327
MboII	GAAGA	1 cut(s)	185
MnlI	CCTC	1 cut(s)	325
Mph1103I	ATGCAT	1 cut(s)	362
MseI	TTAA	1 cut(s)	54
MspI	CCGG	2 cut(s)	225, 255
MspR9I	CCNGG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	255
NdeII	GATC	2 cut(s)	318, 327
NlaIII	CATG	3 cut(s)	113, 380, 392
NlaIV	GGNNCC	1 cut(s)	229
NsiI	ATGCAT	1 cut(s)	362
NspI	RCATGY	2 cut(s)	380, 392
PciI	ACATGT	1 cut(s)	376
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	3 cut(s)	151, 240, 286
PscI	ACATGT	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	229
RsaI	GTAC	2 cut(s)	64, 311
RsaNI	GTAC	2 cut(s)	63, 310
SalI	GTCGAC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	3 cut(s)	150, 239, 285
Sau3AI	GATC	2 cut(s)	318, 327
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	6 cut(s)	24, 89, 140, 147, 340, 402
SfaNI	GCATC	1 cut(s)	369
SsiI	CCGC	2 cut(s)	182, 285
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	253
TaqI	TCGA	2 cut(s)	330, 340
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	65, 222
TseI	GCWGC	2 cut(s)	149, 238
TspDTI	ATGAA	1 cut(s)	98
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	2 cut(s)	65, 222
XceI	RCATGY	2 cut(s)	380, 392
XmiI	GTMKAC	1 cut(s)	340
XspI	CTAG	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.