Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0029616

Physical Location & Seq

Genomic Coordinates Reverse (-)

50255693 .. 50256245

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG242700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGACTACACCTTCAAGCTTGCTGCACGCTTGTTTGTTAGCCTTGAAGATAAGGCGGACATTGAAAAACTAAGCAAACCATTCCGTGCAGTAGTGAATGCCGGAACCATATCGCTGCCCATTGACTTCCCCGGAACTCTGTTTAGTAAAGCCATCAAGGCCGCCAACTTGATTAGGAAGGATTTGTACAAGATCATCAAGCAGAGGAAGGTCGACTTAGCAGAGGGCAATGCATCCCCCACACAAGACATGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016134 GO:0016135 GO:0016137 GO:0016138 GO:0016491 GO:0016705 GO:0016709 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044237 GO:0044238 GO:0044255 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

85

Amino Acids

9.47

Weight (kDa)

9.52

Isoelectric Point (pI)

17.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355321
rosa_samantha	Rh1CG242700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	2 cut(s)	56, 162
AfaI	GTAC	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	3 cut(s)	16, 47, 65
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	23, 115
AsuC2I	CCSGG	1 cut(s)	132
BarI	GAAGNNNNNNTAC	2 cut(s)	170, 202
BbvI	GCAGC	2 cut(s)	10, 102
BccI	CCATC	1 cut(s)	161
BcnI	CCSGG	1 cut(s)	132
BglI	GCCNNNNNGGC	1 cut(s)	158
BisI	GCNGC	3 cut(s)	24, 116, 162
BlsI	GCNGC	3 cut(s)	25, 117, 163
Bme1390I	CCNGG	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	10, 102
BsgI	GTGCAG	2 cut(s)	9, 108
BshFI	GGCC	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	102, 132
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	161
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	192
BspACI	CCGC	2 cut(s)	56, 162
BspANI	GGCC	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	235
BsrGI	TGTACA	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	1 cut(s)	192
BstAUI	TGTACA	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	21, 28
BstDEI	CTNAG	2 cut(s)	71, 217
BstF5I	GGATG	1 cut(s)	233
BstKTI	GATC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	10, 102
BsuRI	GGCC	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	233
Cac8I	GCNNGC	2 cut(s)	21, 28
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	4 cut(s)	19, 42, 152, 161
CviKI_1	RGCY	4 cut(s)	19, 42, 152, 161
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	2 cut(s)	71, 217
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
EciI	GGCGGA	1 cut(s)	71
EcoT22I	ATGCAT	1 cut(s)	235
FaeI	CATG	1 cut(s)	253
FaiI	YATR	3 cut(s)	110, 251, 256
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FatI	CATG	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	3 cut(s)	24, 116, 162
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	3 cut(s)	24, 116, 162
GluI	GCNGC	3 cut(s)	24, 116, 162
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	2 cut(s)	102, 132
Hin1II	CATG	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	17
HpaII	CCGG	2 cut(s)	102, 132
Hpy166II	GTNNAC	1 cut(s)	214
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	3 cut(s)	22, 172, 202
HpyCH4V	TGCA	3 cut(s)	26, 89, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	71, 217
Hsp92II	CATG	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	192
LpnPI	CCDG	2 cut(s)	115, 145
Lsp1109I	GCAGC	2 cut(s)	10, 102
LweI	GCATC	1 cut(s)	242
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	1 cut(s)	59
MnlI	CCTC	2 cut(s)	198, 217
Mph1103I	ATGCAT	1 cut(s)	235
MspI	CCGG	2 cut(s)	102, 132
MspR9I	CCNGG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	158
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	192
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	1 cut(s)	106
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	1 cut(s)	253
PciI	ACATGT	1 cut(s)	249
PctI	GAATGC	1 cut(s)	103
PkrI	GCNGC	3 cut(s)	25, 117, 163
PscI	ACATGT	1 cut(s)	249
PsiI	TTATAA	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	106
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SalI	GTCGAC	1 cut(s)	212
SatI	GCNGC	3 cut(s)	24, 116, 162
Sau3AI	GATC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	3 cut(s)	14, 21, 213
SfaNI	GCATC	1 cut(s)	242
SsiI	CCGC	2 cut(s)	56, 162
StyD4I	CCNGG	1 cut(s)	130
TaqI	TCGA	1 cut(s)	213
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	1 cut(s)	164
TseI	GCWGC	2 cut(s)	23, 115
TspGWI	ACGGA	1 cut(s)	74
XceI	RCATGY	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.