RchiOBHm_Chr1g0357991

C-terminal binding protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
50178638 .. 50178916
279 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 237 bp
ATGAGTGGTACAGATCAAGCGTTAAGTTCCAGTTCTCGGTTTGCTTCCTCTGAAGACTCAAGAAGTAGGAAAACACCTATAGAATCAATGCAAGAGTCGTCTTCCGACCAGCTTCTAAAATCTAGAAAGAGGCTGAGTGGAAAGCCTGGTGAACTGTTAAAGGATGGCTATGTTGTAGAATATAACTCTATATGCAAGAGATATCCCCGGTCTTCATGTCGCAAGGCAAAGAGTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

78

Amino Acids

8.7

Weight (kDa)

9.8

Isoelectric Point (pI)

78.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029692)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0357991
rosa_samantha Rh1DG269000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 36
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 161
BbsI GAAGAC 3 cut(s) 60, 93, 204
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 147
BcnI CCSGG 1 cut(s) 208
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 78
Bme1390I CCNGG 2 cut(s) 147, 208
BmrFI CCNGG 2 cut(s) 147, 208
BpiI GAAGAC 3 cut(s) 60, 93, 204
BpuEI CTTGAG 1 cut(s) 43
BpuMI CCSGG 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 36
Bsp143I GATC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 126
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 145, 206
BstSFI CTRYAG 1 cut(s) 78
BstV2I GAAGAC 3 cut(s) 60, 93, 204
BtsCI GGATG 1 cut(s) 169
Csp6I GTAC 1 cut(s) 9
CviAII CATG 1 cut(s) 216
CviJI RGCY 4 cut(s) 112, 133, 145, 168
CviKI_1 RGCY 4 cut(s) 112, 133, 145, 168
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 134
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Eco32I GATATC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 145
EcoRV GATATC 1 cut(s) 203
FaeI CATG 1 cut(s) 219
FaiI YATR 6 cut(s) 80, 171, 183, 191, 193, 217
FatI CATG 1 cut(s) 215
FokI GGATG 1 cut(s) 176
FspBI CTAG 1 cut(s) 123
HapII CCGG 1 cut(s) 208
Hin1II CATG 1 cut(s) 219
HinfI GANTC 3 cut(s) 56, 83, 95
HpaII CCGG 1 cut(s) 208
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 2 cut(s) 52, 106
Hpy188III TCNNGA 2 cut(s) 60, 123
Hpy8I GTNNAC 1 cut(s) 152
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 91, 195
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 1 cut(s) 219
Kzo9I GATC 1 cut(s) 13
LpnPI CCDG 5 cut(s) 43, 122, 132, 159, 221
MaeI CTAG 1 cut(s) 123
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 3 cut(s) 65, 93, 204
MlyI GAGTC 2 cut(s) 50, 104
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 2 cut(s) 58, 123
MseI TTAA 3 cut(s) 23, 158, 235
MspI CCGG 1 cut(s) 208
MspR9I CCNGG 2 cut(s) 147, 208
MvaI CCWGG 1 cut(s) 147
NciI CCSGG 1 cut(s) 208
NdeII GATC 1 cut(s) 13
NlaIII CATG 1 cut(s) 219
PfeI GAWTC 1 cut(s) 83
PleI GAGTC 2 cut(s) 50, 103
PpsI GAGTC 2 cut(s) 50, 103
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SaqAI TTAA 3 cut(s) 23, 158, 235
Sau3AI GATC 1 cut(s) 13
SchI GAGTC 2 cut(s) 50, 104
ScrFI CCNGG 2 cut(s) 147, 208
SetI ASST 2 cut(s) 79, 114
SfcI CTRYAG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 2 cut(s) 145, 206
TaaI ACNGT 1 cut(s) 156
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 3 cut(s) 23, 158, 235
Tru9I TTAA 3 cut(s) 23, 158, 235
TspDTI ATGAA 1 cut(s) 204
XbaI TCTAGA 1 cut(s) 122
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.