RchiOBHm_Chr1g0358371

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029680
Physical Location & Seq
Forward (+)
50463800 .. 50465328
1529 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 588 bp
ATGGATAATGATCCACGAAATCCCCTGGGACAAGACTTTTGGTCATTCTGCGATGCTATAAATGCTGAAAATTGTAAGACATGTTGTCCTTTAGATGATTTTTGTCAATGGTTGTGGATGCATTGGATGCGGAAACATGAGTATCAGTCAAGGGGACACTGTTATTTGTCGAAAGTAATTTGCTGCTTCTCCTTTGACCAGTTTTCTAGCAGATACAACTTGAGTTTATCTGAAAGCAGCTCCCAGGACAAACATTGCTATTCACAGCTTCTTGAGCTACTCGTAAATGTTTGGGCATACCACAATGCAAGGCGTATGGTATATGACAACCCAGAGACTGGTGCAATGCAGGAACAACATAAGTTCAAGAGCCGCAGGGTTCATCTGTGGGTCAAATGGTCCTCATATTCTACCCTAAAGAGCACGGATGAAGATTTTGCTGAGGAATCAGATTTTGAACACCCACGAGGCGATGGCTGTGGCCATCAACAGCGGAGGTCTTCGATCTGGCAAGGTATATACGAAAAAAGAGACATTTACGGAATAAGCGGAAAGAGAAGAAGAAGCAAAAAAGTAGGGATAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

195

Amino Acids

23.23

Weight (kDa)

8.3

Isoelectric Point (pI)

57.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029680)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0358371
rosa_samantha Rh1CG258300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 338
AciI CCGC 4 cut(s) 130, 373, 493, 549
AclWI GGATC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 481
AfiI CCNNNNNNNGG 1 cut(s) 338
AflIII ACRYGT 1 cut(s) 80
AgsI TTSAA 2 cut(s) 367, 458
AhdI GACNNNNNGTC 2 cut(s) 40, 84
AjnI CCWGG 2 cut(s) 24, 243
AluBI AGCT 3 cut(s) 240, 268, 277
AluI AGCT 3 cut(s) 240, 268, 277
Alw21I GWGCWC 1 cut(s) 425
Alw26I GTCTC 2 cut(s) 329, 525
AlwI GGATC 1 cut(s) 5
AlwNI CAGNNNCTG 1 cut(s) 338
AoxI GGCC 1 cut(s) 481
ApeKI GCWGC 2 cut(s) 183, 237
ArsI GACNNNNNNTTYG 2 cut(s) 21, 53
AspS9I GGNCC 1 cut(s) 399
AvaII GGWCC 1 cut(s) 399
BaeI ACNNNNGTAYC 2 cut(s) 125, 158
BalI TGGCCA 1 cut(s) 483
BauI CACGAG 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 425
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 2 cut(s) 170, 249
BccI CCATC 2 cut(s) 467, 492
BciT130I CCWGG 2 cut(s) 26, 245
BcoDI GTCTC 2 cut(s) 329, 525
BfaI CTAG 1 cut(s) 207
BisI GCNGC 3 cut(s) 184, 238, 373
BlsI GCNGC 3 cut(s) 185, 239, 374
Bme1390I CCNGG 2 cut(s) 26, 245
Bme18I GGWCC 1 cut(s) 399
BmeRI GACNNNNNGTC 2 cut(s) 40, 84
BmgT120I GGNCC 1 cut(s) 399
BmrFI CCNGG 2 cut(s) 26, 245
BmsI GCATC 3 cut(s) 43, 108, 117
BpiI GAAGAC 1 cut(s) 492
Bpu10I CCTNAGC 1 cut(s) 441
BpuEI CTTGAG 2 cut(s) 241, 293
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 3 cut(s) 24, 25, 243
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse1I ACTGG 2 cut(s) 199, 343
Bse3DI GCAATG 2 cut(s) 253, 351
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 2 cut(s) 26, 245
BseDI CCNNGG 3 cut(s) 24, 25, 243
BseGI GGATG 3 cut(s) 123, 132, 433
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMI GCAATG 2 cut(s) 253, 351
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 2 cut(s) 199, 343
BseXI GCAGC 2 cut(s) 170, 249
BshFI GGCC 1 cut(s) 483
BsiHKAI GWGCWC 1 cut(s) 425
BslFI GGGAC 2 cut(s) 42, 168
BslI CCNNNNNNNGG 1 cut(s) 338
BsmAI GTCTC 2 cut(s) 329, 525
BsmFI GGGAC 2 cut(s) 42, 168
BsnI GGCC 1 cut(s) 483
Bsp1286I GDGCHC 1 cut(s) 425
Bsp143I GATC 2 cut(s) 10, 504
BspACI CCGC 4 cut(s) 130, 373, 493, 549
BspANI GGCC 1 cut(s) 483
BspCNI CTCAG 1 cut(s) 433
BspPI GGATC 1 cut(s) 5
BsrDI GCAATG 2 cut(s) 253, 351
BsrI ACTGG 2 cut(s) 199, 343
BssECI CCNNGG 3 cut(s) 24, 25, 243
BssMI GATC 2 cut(s) 10, 504
BssSI CACGAG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 465
Bst2UI CCWGG 2 cut(s) 26, 245
Bst4CI ACNGT 1 cut(s) 161
BstAPI GCANNNNNTGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 441
BstF5I GGATG 3 cut(s) 123, 132, 433
BstKTI GATC 2 cut(s) 13, 507
BstMAI GTCTC 2 cut(s) 329, 525
BstMBI GATC 2 cut(s) 10, 504
BstMWI GCNNNNNNNGC 3 cut(s) 62, 127, 274
BstNI CCWGG 2 cut(s) 26, 245
BstNSI RCATGY 1 cut(s) 84
BstSCI CCNGG 2 cut(s) 24, 243
BstV1I GCAGC 2 cut(s) 170, 249
BstV2I GAAGAC 1 cut(s) 492
BsuRI GGCC 1 cut(s) 483
BtgZI GCGATG 2 cut(s) 66, 486
BtsCI GGATG 3 cut(s) 123, 132, 433
BtsIMutI CAGTG 1 cut(s) 157
CaiI CAGNNNCTG 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 399
CspCI CAANNNNNGTGG 2 cut(s) 95, 130
CviAII CATG 2 cut(s) 81, 137
CviJI RGCY 6 cut(s) 240, 268, 277, 372, 477, 483
CviKI_1 RGCY 6 cut(s) 240, 268, 277, 372, 477, 483
DdeI CTNAG 1 cut(s) 441
DpnI GATC 2 cut(s) 12, 506
DpnII GATC 2 cut(s) 10, 504
DriI GACNNNNNGTC 2 cut(s) 40, 84
EaeI YGGCCR 1 cut(s) 481
Eam1105I GACNNNNNGTC 2 cut(s) 40, 84
Eco47I GGWCC 1 cut(s) 399
EcoRII CCWGG 2 cut(s) 24, 243
EcoT22I ATGCAT 1 cut(s) 123
FaeI CATG 2 cut(s) 84, 140
FaqI GGGAC 2 cut(s) 42, 168
FatI CATG 2 cut(s) 80, 136
Fnu4HI GCNGC 3 cut(s) 184, 238, 373
FokI GGATG 3 cut(s) 130, 139, 440
Fsp4HI GCNGC 3 cut(s) 184, 238, 373
FspBI CTAG 1 cut(s) 207
GluI GCNGC 3 cut(s) 184, 238, 373
HaeIII GGCC 1 cut(s) 483
Hin1II CATG 2 cut(s) 84, 140
HinfI GANTC 1 cut(s) 446
Hpy188I TCNGA 2 cut(s) 232, 451
Hpy188III TCNNGA 2 cut(s) 272, 367
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 4 cut(s) 121, 308, 344, 349
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 127, 274
HpyF3I CTNAG 1 cut(s) 441
Hsp92II CATG 2 cut(s) 84, 140
Kzo9I GATC 2 cut(s) 10, 504
LmnI GCTCC 1 cut(s) 245
Lsp1109I GCAGC 2 cut(s) 170, 249
LweI GCATC 3 cut(s) 43, 108, 117
MaeI CTAG 1 cut(s) 207
MalI GATC 2 cut(s) 12, 506
MboI GATC 2 cut(s) 10, 504
MboII GAAGA 4 cut(s) 443, 492, 570, 573
MhlI GDGCHC 1 cut(s) 425
MlsI TGGCCA 1 cut(s) 483
MluCI AATT 2 cut(s) 70, 177
MluNI TGGCCA 1 cut(s) 483
MnlI CCTC 4 cut(s) 412, 436, 461, 489
Mox20I TGGCCA 1 cut(s) 483
Mph1103I ATGCAT 1 cut(s) 123
MscI TGGCCA 1 cut(s) 483
Msp20I TGGCCA 1 cut(s) 483
MspA1I CMGCKG 1 cut(s) 493
MspR9I CCNGG 2 cut(s) 26, 245
MvaI CCWGG 2 cut(s) 26, 245
MwoI GCNNNNNNNGC 3 cut(s) 62, 127, 274
NdeII GATC 2 cut(s) 10, 504
NlaIII CATG 2 cut(s) 84, 140
NsiI ATGCAT 1 cut(s) 123
NspI RCATGY 1 cut(s) 84
PasI CCCWGGG 1 cut(s) 25
PciI ACATGT 1 cut(s) 80
PfeI GAWTC 1 cut(s) 446
PflMI CCANNNNNTGG 1 cut(s) 338
PkrI GCNGC 3 cut(s) 185, 239, 374
PscI ACATGT 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 24, 243
PspGI CCWGG 2 cut(s) 24, 243
PspPI GGNCC 1 cut(s) 399
PstNI CAGNNNCTG 1 cut(s) 338
SatI GCNGC 3 cut(s) 184, 238, 373
Sau3AI GATC 2 cut(s) 10, 504
Sau96I GGNCC 1 cut(s) 399
ScrFI CCNGG 2 cut(s) 26, 245
SduI GDGCHC 1 cut(s) 425
SetI ASST 5 cut(s) 242, 270, 279, 500, 517
SfaNI GCATC 3 cut(s) 43, 108, 117
SinI GGWCC 1 cut(s) 399
SmlI CTYRAG 2 cut(s) 220, 272
SmoI CTYRAG 2 cut(s) 220, 272
Sse9I AATT 2 cut(s) 70, 177
SsiI CCGC 4 cut(s) 130, 373, 493, 549
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 24, 243
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 2 cut(s) 170, 503
TasI AATT 2 cut(s) 70, 177
TauI GCSGC 1 cut(s) 375
TfiI GAWTC 1 cut(s) 446
TscAI CASTG 1 cut(s) 164
TseI GCWGC 2 cut(s) 183, 237
TspDTI ATGAA 2 cut(s) 371, 444
TspGWI ACGGA 2 cut(s) 440, 555
TspRI CASTG 1 cut(s) 164
Van91I CCANNNNNTGG 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 399
XceI RCATGY 1 cut(s) 84
XspI CTAG 1 cut(s) 207
Zsp2I ATGCAT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.