Rh1CG258300

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0029680
Physical Location & Seq
Forward (+)
52292620 .. 52308849
16230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG258300.1

Sequence Viewer

Length: 462 bp
ATGGTGACTGAGAGCCGCAGAAACCTGGAAAGGGATCAGACCGCAGCTGAAAATGCTATTCAAACACAGAGGCATGCAGACGTACTCTTCTTTTGGGTTAGCATGGATAATGATCCACGAAATCCCCTGGGACAAGACTTTTGGTCATTCTGCGATGCTATAAATGCTGAAAATTGCAAGACATGTTGTCCTTTAGATGATTTTTGTCAGACTGGTGCAATGCAGGAACAACATAAGTTCAAGAGCCGCAGGGTTCATCTGTGGGTCAAGTGGCTCTCATATTCCACCCTGAAGAGCACGGATGAAGATTTTGCTGAGGAATCAGATTTTGAACACCCACGAGGCGATGGCTGTGGCCATCAACAACGGAGGTCTTCGATCTGGCAAGGTATATACGAAAAAAGAGACATTTACAGAATTAGCGGAAAGAGAAGAAGAAGCAAAAAAGTAGGGAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

153

Amino Acids

18.05

Weight (kDa)

8.55

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029680)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0358371
rosa_samantha Rh1CG258300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 16, 42, 247, 423
AclWI GGATC 2 cut(s) 42, 107
AcoI YGGCCR 1 cut(s) 355
AcuI CTGAAG 1 cut(s) 311
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 31
AflIII ACRYGT 1 cut(s) 182
AgsI TTSAA 3 cut(s) 62, 241, 332
AhdI GACNNNNNGTC 2 cut(s) 142, 186
AjnI CCWGG 2 cut(s) 24, 126
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 399
AlwI GGATC 2 cut(s) 42, 107
AoxI GGCC 1 cut(s) 355
ApeKI GCWGC 1 cut(s) 44
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
AsuHPI GGTGA 1 cut(s) 16
BalI TGGCCA 1 cut(s) 357
BauI CACGAG 1 cut(s) 339
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 299
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 56
BccI CCATC 2 cut(s) 341, 366
BciT130I CCWGG 2 cut(s) 26, 128
BcoDI GTCTC 1 cut(s) 399
BisI GCNGC 3 cut(s) 16, 45, 247
BlsI GCNGC 3 cut(s) 17, 46, 248
Bme1390I CCNGG 2 cut(s) 26, 128
BmeRI GACNNNNNGTC 2 cut(s) 142, 186
BmrFI CCNGG 2 cut(s) 26, 128
BmsI GCATC 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 366
Bpu10I CCTNAGC 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 126, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 111
BseBI CCWGG 2 cut(s) 26, 128
BseDI CCNNGG 2 cut(s) 126, 127
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 217
BseXI GCAGC 1 cut(s) 56
BshFI GGCC 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 299
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 399
BsmFI GGGAC 1 cut(s) 144
BsnI GGCC 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 299
Bsp143I GATC 3 cut(s) 34, 112, 378
BspACI CCGC 4 cut(s) 16, 42, 247, 423
BspANI GGCC 1 cut(s) 357
BspCNI CTCAG 1 cut(s) 307
BspPI GGATC 2 cut(s) 42, 107
BspQI GCTCTTC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 225
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 126, 127
BssMI GATC 3 cut(s) 34, 112, 378
BssSI CACGAG 1 cut(s) 339
Bst2BI CACGAG 1 cut(s) 339
Bst2UI CCWGG 2 cut(s) 26, 128
Bst6I CTCTTC 2 cut(s) 92, 287
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 9, 315
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 3 cut(s) 37, 115, 381
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 3 cut(s) 34, 112, 378
BstMWI GCNNNNNNNGC 2 cut(s) 53, 164
BstNI CCWGG 2 cut(s) 26, 128
BstNSI RCATGY 2 cut(s) 77, 186
BstSCI CCNGG 2 cut(s) 24, 126
BstV1I GCAGC 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 366
BsuRI GGCC 1 cut(s) 357
BtgZI GCGATG 2 cut(s) 168, 360
BtsCI GGATG 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 83
CviAII CATG 3 cut(s) 74, 103, 183
CviJI RGCY 6 cut(s) 15, 47, 246, 274, 351, 357
CviKI_1 RGCY 6 cut(s) 15, 47, 246, 274, 351, 357
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 2 cut(s) 9, 315
DpnI GATC 3 cut(s) 36, 114, 380
DpnII GATC 3 cut(s) 34, 112, 378
DriI GACNNNNNGTC 2 cut(s) 142, 186
EaeI YGGCCR 1 cut(s) 355
Eam1104I CTCTTC 2 cut(s) 92, 287
Eam1105I GACNNNNNGTC 2 cut(s) 142, 186
EarI CTCTTC 2 cut(s) 92, 287
Eco57I CTGAAG 1 cut(s) 311
EcoRII CCWGG 2 cut(s) 24, 126
FaeI CATG 3 cut(s) 77, 106, 186
FaiI YATR 8 cut(s) 75, 104, 161, 184, 234, 280, 392, 394
FaqI GGGAC 1 cut(s) 144
FatI CATG 3 cut(s) 73, 102, 182
Fnu4HI GCNGC 3 cut(s) 16, 45, 247
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 3 cut(s) 16, 45, 247
GluI GCNGC 3 cut(s) 16, 45, 247
HaeIII GGCC 1 cut(s) 357
Hin1II CATG 3 cut(s) 77, 106, 186
HinfI GANTC 1 cut(s) 320
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 3 cut(s) 39, 210, 325
Hpy188III TCNNGA 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 4 cut(s) 77, 177, 218, 223
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 164
HpyF3I CTNAG 2 cut(s) 9, 315
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 3 cut(s) 77, 106, 186
Kzo9I GATC 3 cut(s) 34, 112, 378
LguI GCTCTTC 1 cut(s) 287
LpnPI CCDG 9 cut(s) 11, 38, 113, 140, 198, 209, 235, 302, 367
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 1 cut(s) 145
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 4
MalI GATC 3 cut(s) 36, 114, 380
MboI GATC 3 cut(s) 34, 112, 378
MboII GAAGA 6 cut(s) 79, 304, 317, 366, 444, 447
MhlI GDGCHC 1 cut(s) 299
MlsI TGGCCA 1 cut(s) 357
MluCI AATT 2 cut(s) 172, 417
MluNI TGGCCA 1 cut(s) 357
MnlI CCTC 4 cut(s) 63, 310, 335, 363
Mox20I TGGCCA 1 cut(s) 357
MscI TGGCCA 1 cut(s) 357
Msp20I TGGCCA 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 26, 128
MvaI CCWGG 2 cut(s) 26, 128
MwoI GCNNNNNNNGC 2 cut(s) 53, 164
NdeII GATC 3 cut(s) 34, 112, 378
NlaIII CATG 3 cut(s) 77, 106, 186
NmuCI GTSAC 1 cut(s) 4
NspI RCATGY 2 cut(s) 77, 186
PaeI GCATGC 1 cut(s) 77
PasI CCCWGGG 1 cut(s) 127
PciI ACATGT 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 287
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 3 cut(s) 17, 46, 248
PscI ACATGT 1 cut(s) 182
Psp6I CCWGG 2 cut(s) 24, 126
PspGI CCWGG 2 cut(s) 24, 126
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 287
SatI GCNGC 3 cut(s) 16, 45, 247
Sau3AI GATC 3 cut(s) 34, 112, 378
ScrFI CCNGG 2 cut(s) 26, 128
SduI GDGCHC 1 cut(s) 299
SetI ASST 5 cut(s) 27, 49, 84, 374, 391
SfaNI GCATC 1 cut(s) 145
SphI GCATGC 1 cut(s) 77
Sse9I AATT 2 cut(s) 172, 417
SsiI CCGC 4 cut(s) 16, 42, 247, 423
StyD4I CCNGG 2 cut(s) 24, 126
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 377
TasI AATT 2 cut(s) 172, 417
TauI GCSGC 2 cut(s) 18, 249
TfiI GAWTC 1 cut(s) 320
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 245, 318
TspGWI ACGGA 2 cut(s) 314, 382
XceI RCATGY 2 cut(s) 77, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.