RchiOBHm_Chr1g0360371

Transmembrane protein 56-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029660
Physical Location & Seq
Reverse (-)
52223157 .. 52225459
2303 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 555 bp
ATGGAGATTTGGACTCTTATCAGCACTCAGGATTATTTTAAGGCTTCATGGAGCTTGCATAAATCGGTACATTTAAAGGCCAAGCAGTCTAATGGGACGGGAAATCCAGAGAACGAAGGCTGGCAATATCGCATGAAGAAAGGACAGGGTCGAACTCCGAAACTTCCTTATTTTGATTGGACAGGACGGGTTTACAAATTAACAGGTCTTATTAGCCTTCATAGCTTCAAGGAATATCAGAAATTGAGCAAAGCAGAAAAAGTTGAATGGAACAACTGGGGGTTCTCAATTGTTCATGCTATTGCTGTAGCAGTTGCATCTTTTTACCTTATACTCTTATCAGATACATTTCATGAGGGTTATAGTGATGAGCTGATTGTTAGTAGAAGATCCACTTTTTCATATACAACATTGGGGATCTCCATTGGTTATTTTCTGGCAGACATAGCAATGATTTTTTGGCATTTTCCTGCTTTAGGTGGACTGGAGTATGTTTTGCACCATGGACTATCTATGTTCTCAATCTTCCTTTCCCTTGTAAGTGGTGAAGGGTAG

Protein Analysis

184

Amino Acids

21.02

Weight (kDa)

8.69

Isoelectric Point (pI)

16.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 89 - 181 2.5e-12 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0029660)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0360371
rosa_samantha Rh7CG245600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 384, 425
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 2 cut(s) 229, 266
AluBI AGCT 3 cut(s) 54, 225, 373
AluI AGCT 3 cut(s) 54, 225, 373
AlwI GGATC 2 cut(s) 384, 425
AoxI GGCC 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 306
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 326
BmuI ACTGGG 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 502
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 2 cut(s) 281, 489
Bse3DI GCAATG 1 cut(s) 456
BseDI CCNNGG 1 cut(s) 502
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 281, 489
BshFI GGCC 1 cut(s) 80
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 476
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 1 cut(s) 80
Bsp143I GATC 2 cut(s) 389, 417
Bsp19I CCATGG 1 cut(s) 502
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 40
BspHI TCATGA 1 cut(s) 352
BspPI GGATC 2 cut(s) 384, 425
BsrDI GCAATG 1 cut(s) 456
BsrI ACTGG 2 cut(s) 281, 489
BssECI CCNNGG 1 cut(s) 502
BssMI GATC 2 cut(s) 389, 417
BssT1I CCWWGG 1 cut(s) 502
BstC8I GCNNGC 2 cut(s) 56, 122
BstDEI CTNAG 1 cut(s) 27
BstDSI CCRYGG 1 cut(s) 502
BstENI CCTNNNNNAGG 1 cut(s) 474
BstKTI GATC 2 cut(s) 392, 420
BstMBI GATC 2 cut(s) 389, 417
BstMWI GCNNNNNNNGC 2 cut(s) 222, 446
BstSFI CTRYAG 1 cut(s) 306
BstX2I RGATCY 2 cut(s) 389, 417
BstYI RGATCY 2 cut(s) 389, 417
BsuRI GGCC 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 502
Cac8I GCNNGC 2 cut(s) 56, 122
CciI TCATGA 1 cut(s) 352
Csp6I GTAC 1 cut(s) 68
CviAII CATG 5 cut(s) 48, 133, 296, 353, 503
CviJI RGCY 7 cut(s) 44, 54, 80, 120, 216, 225, 373
CviKI_1 RGCY 7 cut(s) 44, 54, 80, 120, 216, 225, 373
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 1 cut(s) 27
DpnI GATC 2 cut(s) 391, 419
DpnII GATC 2 cut(s) 389, 417
DraI TTTAAA 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 502
EcoNI CCTNNNNNAGG 1 cut(s) 474
EcoT14I CCWWGG 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 502
FaeI CATG 5 cut(s) 51, 136, 299, 356, 506
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FaqI GGGAC 1 cut(s) 109
FatI CATG 5 cut(s) 47, 132, 295, 352, 502
GsuI CTGGAG 1 cut(s) 506
HaeIII GGCC 1 cut(s) 80
Hin1II CATG 5 cut(s) 51, 136, 299, 356, 506
HinfI GANTC 1 cut(s) 13
Hpy166II GTNNAC 2 cut(s) 193, 482
Hpy188I TCNGA 3 cut(s) 159, 240, 343
Hpy188III TCNNGA 3 cut(s) 29, 107, 353
Hpy8I GTNNAC 2 cut(s) 193, 482
HpyAV CCTTC 3 cut(s) 110, 227, 542
HpyCH4V TGCA 3 cut(s) 58, 317, 499
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 446
HpyF3I CTNAG 1 cut(s) 27
Hsp92II CATG 5 cut(s) 51, 136, 299, 356, 506
Kzo9I GATC 2 cut(s) 389, 417
LmnI GCTCC 1 cut(s) 51
LweI GCATC 1 cut(s) 326
MalI GATC 2 cut(s) 391, 419
MboI GATC 2 cut(s) 389, 417
MboII GAAGA 3 cut(s) 148, 399, 517
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 2 cut(s) 389, 417
MluCI AATT 3 cut(s) 197, 242, 288
MlyI GAGTC 1 cut(s) 7
MnlI CCTC 1 cut(s) 349
MseI TTAA 3 cut(s) 39, 74, 200
MslI CAYNNNNRTG 1 cut(s) 449
MunI CAATTG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 222, 446
NcoI CCATGG 1 cut(s) 502
NdeII GATC 2 cut(s) 389, 417
NlaIII CATG 5 cut(s) 51, 136, 299, 356, 506
PagI TCATGA 1 cut(s) 352
PflFI GACNNNGTC 1 cut(s) 147
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
PsuI RGATCY 2 cut(s) 389, 417
PsyI GACNNNGTC 1 cut(s) 147
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 3 cut(s) 39, 74, 200
Sau3AI GATC 2 cut(s) 389, 417
SchI GAGTC 1 cut(s) 7
SetI ASST 6 cut(s) 56, 208, 227, 330, 375, 481
SfaNI GCATC 1 cut(s) 326
SfcI CTRYAG 1 cut(s) 306
SmiMI CAYNNNNRTG 1 cut(s) 449
Sse9I AATT 3 cut(s) 197, 242, 288
StyI CCWWGG 1 cut(s) 502
TaqI TCGA 1 cut(s) 151
TasI AATT 3 cut(s) 197, 242, 288
Tru1I TTAA 3 cut(s) 39, 74, 200
Tru9I TTAA 3 cut(s) 39, 74, 200
TspDTI ATGAA 6 cut(s) 36, 149, 209, 284, 341, 390
Tth111I GACNNNGTC 1 cut(s) 147
XagI CCTNNNNNAGG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.