Rh7CG245600

Transmembrane protein 56-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0029660
Physical Location & Seq
Reverse (-)
22967416 .. 22986679
19264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG245600.1

Sequence Viewer

Length: 513 bp
ATGGAGATTTGGACTCTTATCAGCACTCAGGATTGTTTTAAGGCTTCGTGGAGCTTGCATAAATCGTTACATTTAAAGGCCAAGCAGTCCAATGGGGCGAGAAATCCAGAGAACGAAGGCTGGCAATATTGCATGAAGAAAGGACAGGGTCGAACTCCGAAACTTCCTTATTTTGATTGGACAGGAGGGTTCTCAACTGTTCATGCTATTGCTGTAGCAGTTGCATCTTTTTACCTTATACTCTTATCAGATACATTTCATGAGGGTTATAGTGATGAGCTGATCGTTAGTAGAAGATCCACTTTTTCATATACAACATTGGGGATCTCCATTGGTTATTTTCTGGCAGACATAGCAATGATTTTTTGGCATTTTCCTACTTTAGGTGGACTGGAGTATGTAAGTTGCAAGGATTCTTTTGTTCATTTACTTTTTCGTCCACATGTTTTTCCATTTTCATCAAAAATGTGTGTGAATAATGGATTGTATGTATTTAGAATGCACGACGTCTAA

Protein Analysis

170

Amino Acids

19.45

Weight (kDa)

8.34

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 63 - 170 4.8e-06 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029660)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0360371
rosa_samantha Rh7CG245600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 510
AclWI GGATC 2 cut(s) 291, 332
AcyI GRCGYC 1 cut(s) 507
AfiI CCNNNNNNNGG 1 cut(s) 383
AflIII ACRYGT 1 cut(s) 442
AluBI AGCT 2 cut(s) 54, 280
AluI AGCT 2 cut(s) 54, 280
AlwI GGATC 2 cut(s) 291, 332
AoxI GGCC 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 213
BmsI GCATC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 413
BsaHI GRCGYC 1 cut(s) 507
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 396
Bse3DI GCAATG 1 cut(s) 363
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 396
BshFI GGCC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 383
BsmI GAATGC 1 cut(s) 504
BsnI GGCC 1 cut(s) 80
Bsp143I GATC 3 cut(s) 282, 296, 324
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 40
BspHI TCATGA 1 cut(s) 259
BspPI GGATC 2 cut(s) 291, 332
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 1 cut(s) 396
BssMI GATC 3 cut(s) 282, 296, 324
BssNI GRCGYC 1 cut(s) 507
Bst4CI ACNGT 1 cut(s) 199
BstACI GRCGYC 1 cut(s) 507
BstC8I GCNNGC 2 cut(s) 56, 122
BstDEI CTNAG 1 cut(s) 27
BstENI CCTNNNNNAGG 1 cut(s) 381
BstKTI GATC 3 cut(s) 285, 299, 327
BstMBI GATC 3 cut(s) 282, 296, 324
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNSI RCATGY 1 cut(s) 446
BstSFI CTRYAG 1 cut(s) 213
BstX2I RGATCY 2 cut(s) 296, 324
BstYI RGATCY 2 cut(s) 296, 324
BsuRI GGCC 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 56, 122
CciI TCATGA 1 cut(s) 259
CviAII CATG 4 cut(s) 133, 203, 260, 443
CviJI RGCY 5 cut(s) 44, 54, 80, 120, 280
CviKI_1 RGCY 5 cut(s) 44, 54, 80, 120, 280
DdeI CTNAG 1 cut(s) 27
DpnI GATC 3 cut(s) 284, 298, 326
DpnII GATC 3 cut(s) 282, 296, 324
DraI TTTAAA 1 cut(s) 75
EcoNI CCTNNNNNAGG 1 cut(s) 381
FaeI CATG 4 cut(s) 136, 206, 263, 446
FalI AAGNNNNNCTT 2 cut(s) 286, 318
FatI CATG 4 cut(s) 132, 202, 259, 442
GsuI CTGGAG 1 cut(s) 413
HaeIII GGCC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 507
Hin1II CATG 4 cut(s) 136, 206, 263, 446
HinfI GANTC 2 cut(s) 13, 413
Hpy166II GTNNAC 2 cut(s) 389, 440
Hpy188I TCNGA 2 cut(s) 159, 250
Hpy188III TCNNGA 3 cut(s) 29, 107, 260
Hpy8I GTNNAC 2 cut(s) 389, 440
Hpy99I CGWCG 1 cut(s) 509
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 507
HpyCH4V TGCA 5 cut(s) 58, 132, 224, 408, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 507
Hsp92I GRCGYC 1 cut(s) 507
Hsp92II CATG 4 cut(s) 136, 206, 263, 446
Kzo9I GATC 3 cut(s) 282, 296, 324
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 7 cut(s) 14, 106, 120, 131, 168, 329, 377
LweI GCATC 1 cut(s) 233
MaeII ACGT 1 cut(s) 507
MaeIII GTNAC 1 cut(s) 66
MalI GATC 3 cut(s) 284, 298, 326
MboI GATC 3 cut(s) 282, 296, 324
MboII GAAGA 2 cut(s) 148, 306
MflI RGATCY 2 cut(s) 296, 324
MlyI GAGTC 1 cut(s) 7
MnlI CCTC 2 cut(s) 179, 256
MseI TTAA 2 cut(s) 39, 74
MslI CAYNNNNRTG 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 504
MwoI GCNNNNNNNGC 1 cut(s) 353
NdeII GATC 3 cut(s) 282, 296, 324
NlaIII CATG 4 cut(s) 136, 206, 263, 446
NspI RCATGY 1 cut(s) 446
PagI TCATGA 1 cut(s) 259
PciI ACATGT 1 cut(s) 442
PctI GAATGC 1 cut(s) 504
PfeI GAWTC 1 cut(s) 413
PflFI GACNNNGTC 1 cut(s) 147
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
PscI ACATGT 1 cut(s) 442
PsuI RGATCY 2 cut(s) 296, 324
PsyI GACNNNGTC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 356
SaqAI TTAA 2 cut(s) 39, 74
Sau3AI GATC 3 cut(s) 282, 296, 324
SchI GAGTC 1 cut(s) 7
SetI ASST 5 cut(s) 56, 237, 282, 388, 510
SfaNI GCATC 1 cut(s) 233
SfcI CTRYAG 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 356
SspI AATATT 1 cut(s) 128
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 510
TaqI TCGA 1 cut(s) 151
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 2 cut(s) 39, 74
Tru9I TTAA 2 cut(s) 39, 74
TspDTI ATGAA 6 cut(s) 149, 191, 248, 297, 413, 447
Tth111I GACNNNGTC 1 cut(s) 147
XagI CCTNNNNNAGG 1 cut(s) 381
XceI RCATGY 1 cut(s) 446
ZraI GACGTC 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.