RchiOBHm_Chr1g0369621

U-box domain-containing protein 62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0029547
Physical Location & Seq
Forward (+)
59381734 .. 59385149
3416 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 804 bp
ATGATATTGCCTTGTGGGCATTCATTTGGAGCGGGTGGAGTACAGCAAGTTATCACAATGCATTCGGCAAAGAGAGGTACTAACTATATATGGTTTTGGAAAGATAATATTTGCGTGTATCAGATCAATATCCCTTTATGCTGTTTTGATTGTCAAATTGAATCTTTGTTCTGTTTTTTCTTAATGTGTTGTCGGAAAGCGTGCTTCACCTGTTCTCAGTCAATTTCAGAAGACTCAATTGCTCCAAATCTCTCTCTTCGAAGTGCTGTGCAGGCATTCCGTCATGAAGAGGAGTTACACTTCTATCTCTCATCCAAAAGGAAAAGAGAAAGGCCTGACCAGGACAGGGGTGGTTATGGTGATTTAGCACTCACGCATCCTCCAAGGGGTAGAGGTGTTCAATTTCCATTTCTTATGACAAATCGAGTTATTATAAAGGGTAATAAAAGGACACCACAACGCTTTGTTGGGCGTGAGGCAGTTGTTACAACACAATGCTTAAATGGATGGCATGTGGTAAAGACATTGGATAATGCAGAGAGCGTAAAGTTGCAGTATCACTCACTTGCAAAGGTATCAGATGATTCATCATCCAAGGCCCTGCCAAGCAATATACATGATATTATACATGACATTATGTCCTCTATGACGAATAAACAATGTTTGATTGTGAATGTTGGGGAATTTGGGCCATCTTTCCTCCCGAGAGTAAATGAAAAGGGATCAATGGGTCTGAGGTTCTCTCTCAAAGAATCCATCTTCAAGCAGAGACTGTTCCAAGTGAAGAAAAATGGATCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box

Protein Analysis

267

Amino Acids

30.26

Weight (kDa)

9.25

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUB62-63_C PF23112 133 - 191 4.7e-32 U-box protein 62/63 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029547)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0369621
rosa_multiflora Rmu_sc0001154.1_g000013

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
AccBSI CCGCTC 1 cut(s) 32
AciI CCGC 1 cut(s) 32
AclWI GGATC 2 cut(s) 730, 802
AcsI RAATTY 1 cut(s) 683
AfaI GTAC 2 cut(s) 42, 79
AfiI CCNNNNNNNGG 2 cut(s) 346, 386
AgsI TTSAA 3 cut(s) 161, 401, 763
AhdI GACNNNNNGTC 1 cut(s) 637
AjnI CCWGG 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 763
AlwI GGATC 2 cut(s) 730, 802
AlwNI CAGNNNCTG 1 cut(s) 772
Ama87I CYCGRG 1 cut(s) 703
AoxI GGCC 3 cut(s) 332, 597, 689
ApoI RAATTY 1 cut(s) 683
AspS9I GGNCC 2 cut(s) 598, 689
AsuHPI GGTGA 2 cut(s) 199, 371
AsuII TTCGAA 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 703
BarI GAAGNNNNNNTAC 2 cut(s) 279, 311
BbsI GAAGAC 1 cut(s) 237
BccI CCATC 3 cut(s) 501, 700, 764
BciT130I CCWGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 763
BglI GCCNNNNNGGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 341
BmeRI GACNNNNNGTC 1 cut(s) 637
BmeT110I CYCGRG 1 cut(s) 703
BmgT120I GGNCC 2 cut(s) 598, 689
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 1 cut(s) 385
BpiI GAAGAC 1 cut(s) 237
BplI GAGNNNNNCTC 2 cut(s) 727, 759
Bpu14I TTCGAA 1 cut(s) 259
BsaBI GATNNNNATC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 383, 594
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 386
Bse8I GATNNNNATC 1 cut(s) 128
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 2 cut(s) 383, 594
BseGI GGATG 4 cut(s) 311, 376, 512, 590
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 2 cut(s) 346, 386
BseMII CTCAG 2 cut(s) 230, 725
BseRI GAGGAG 1 cut(s) 305
BsgI GTGCAG 1 cut(s) 290
BshFI GGCC 3 cut(s) 334, 599, 691
BsiHKCI CYCGRG 1 cut(s) 703
BslI CCNNNNNNNGG 2 cut(s) 346, 386
BsmAI GTCTC 1 cut(s) 763
BsmI GAATGC 3 cut(s) 19, 61, 275
BsnI GGCC 3 cut(s) 334, 599, 691
BsoBI CYCGRG 1 cut(s) 703
Bsp119I TTCGAA 1 cut(s) 259
Bsp143I GATC 3 cut(s) 123, 722, 794
BspACI CCGC 1 cut(s) 32
BspANI GGCC 3 cut(s) 334, 599, 691
BspCNI CTCAG 2 cut(s) 229, 726
BspHI TCATGA 1 cut(s) 283
BspPI GGATC 2 cut(s) 730, 802
BspT104I TTCGAA 1 cut(s) 259
BsrBI CCGCTC 1 cut(s) 32
BssECI CCNNGG 2 cut(s) 383, 594
BssMI GATC 3 cut(s) 123, 722, 794
BssT1I CCWWGG 2 cut(s) 383, 594
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 1 cut(s) 774
Bst6I CTCTTC 2 cut(s) 261, 282
BstBI TTCGAA 1 cut(s) 259
BstC8I GCNNGC 2 cut(s) 202, 273
BstDEI CTNAG 2 cut(s) 216, 734
BstF5I GGATG 4 cut(s) 311, 376, 512, 590
BstKTI GATC 3 cut(s) 126, 725, 797
BstMAI GTCTC 1 cut(s) 763
BstMBI GATC 3 cut(s) 123, 722, 794
BstMWI GCNNNNNNNGC 2 cut(s) 16, 272
BstNI CCWGG 1 cut(s) 341
BstNSI RCATGY 1 cut(s) 515
BstSCI CCNGG 1 cut(s) 339
BstV2I GAAGAC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 794
BstYI RGATCY 1 cut(s) 794
BsuRI GGCC 3 cut(s) 334, 599, 691
BtsCI GGATG 4 cut(s) 311, 376, 512, 590
Cac8I GCNNGC 2 cut(s) 202, 273
CaiI CAGNNNCTG 1 cut(s) 772
CciI TCATGA 1 cut(s) 283
Cfr13I GGNCC 2 cut(s) 598, 689
Csp6I GTAC 2 cut(s) 41, 78
CviAII CATG 4 cut(s) 284, 512, 617, 629
CviJI RGCY 3 cut(s) 334, 599, 691
CviKI_1 RGCY 3 cut(s) 334, 599, 691
CviQI GTAC 2 cut(s) 41, 78
DdeI CTNAG 2 cut(s) 216, 734
DpnI GATC 3 cut(s) 125, 724, 796
DpnII GATC 3 cut(s) 123, 722, 794
DriI GACNNNNNGTC 1 cut(s) 637
Eam1104I CTCTTC 2 cut(s) 261, 282
Eam1105I GACNNNNNGTC 1 cut(s) 637
EarI CTCTTC 2 cut(s) 261, 282
Eco130I CCWWGG 2 cut(s) 383, 594
Eco147I AGGCCT 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 703
EcoO109I RGGNCCY 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 2 cut(s) 383, 594
EcoT22I ATGCAT 1 cut(s) 63
ErhI CCWWGG 2 cut(s) 383, 594
FaeI CATG 4 cut(s) 287, 515, 620, 632
FatI CATG 4 cut(s) 283, 511, 616, 628
FauI CCCGC 1 cut(s) 25
FokI GGATG 4 cut(s) 298, 363, 519, 577
HaeIII GGCC 3 cut(s) 334, 599, 691
Hin1II CATG 4 cut(s) 287, 515, 620, 632
HinfI GANTC 4 cut(s) 161, 233, 584, 752
HphI GGTGA 2 cut(s) 199, 371
Hpy188I TCNGA 5 cut(s) 123, 195, 229, 580, 735
Hpy188III TCNNGA 2 cut(s) 284, 703
HpyCH4III ACNGT 1 cut(s) 774
HpyCH4V TGCA 5 cut(s) 61, 271, 536, 553, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 272
HpyF3I CTNAG 2 cut(s) 216, 734
Hsp92II CATG 4 cut(s) 287, 515, 620, 632
Kzo9I GATC 3 cut(s) 123, 722, 794
LmnI GCTCC 2 cut(s) 29, 247
LpnPI CCDG 7 cut(s) 223, 257, 326, 331, 348, 353, 614
LweI GCATC 1 cut(s) 385
MaeIII GTNAC 2 cut(s) 294, 484
MalI GATC 3 cut(s) 125, 724, 796
MbiI CCGCTC 1 cut(s) 32
MboI GATC 3 cut(s) 123, 722, 794
MboII GAAGA 5 cut(s) 242, 248, 299, 751, 796
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 1 cut(s) 794
MluCI AATT 5 cut(s) 156, 222, 237, 401, 683
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 8 cut(s) 68, 283, 386, 390, 469, 652, 710, 729
Mph1103I ATGCAT 1 cut(s) 63
MseI TTAA 2 cut(s) 182, 500
MspR9I CCNGG 1 cut(s) 341
MunI CAATTG 1 cut(s) 237
Mva1269I GAATGC 3 cut(s) 19, 61, 275
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 2 cut(s) 16, 272
NdeII GATC 3 cut(s) 123, 722, 794
NlaIII CATG 4 cut(s) 287, 515, 620, 632
NsiI ATGCAT 1 cut(s) 63
NspI RCATGY 1 cut(s) 515
NspV TTCGAA 1 cut(s) 259
PagI TCATGA 1 cut(s) 283
PceI AGGCCT 1 cut(s) 334
PctI GAATGC 3 cut(s) 19, 61, 275
PfeI GAWTC 3 cut(s) 161, 584, 752
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PsiI TTATAA 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 339
PspGI CCWGG 1 cut(s) 339
PspPI GGNCC 2 cut(s) 598, 689
PstNI CAGNNNCTG 1 cut(s) 772
PsuI RGATCY 1 cut(s) 794
RsaI GTAC 2 cut(s) 42, 79
RsaNI GTAC 2 cut(s) 41, 78
SaqAI TTAA 2 cut(s) 182, 500
Sau3AI GATC 3 cut(s) 123, 722, 794
Sau96I GGNCC 2 cut(s) 598, 689
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 341
SetI ASST 5 cut(s) 79, 212, 397, 576, 740
SfaNI GCATC 1 cut(s) 385
SfuI TTCGAA 1 cut(s) 259
Sse9I AATT 5 cut(s) 156, 222, 237, 401, 683
SseBI AGGCCT 1 cut(s) 334
SsiI CCGC 1 cut(s) 32
SspI AATATT 1 cut(s) 109
StuI AGGCCT 1 cut(s) 334
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 2 cut(s) 383, 594
TaaI ACNGT 1 cut(s) 774
TaqI TCGA 2 cut(s) 259, 424
TasI AATT 5 cut(s) 156, 222, 237, 401, 683
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 3 cut(s) 161, 584, 752
Tru1I TTAA 2 cut(s) 182, 500
Tru9I TTAA 2 cut(s) 182, 500
TspDTI ATGAA 4 cut(s) 12, 300, 576, 729
TspGWI ACGGA 1 cut(s) 269
XapI RAATTY 1 cut(s) 683
XceI RCATGY 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.