Rmu_sc0001154.1_g000013

U-box domain-containing protein 62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001154.1
OG0029547
Physical Location & Seq
Forward (+)
89713 .. 91784
2072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001154.1_g000013.1.cds

Sequence Viewer

Length: 462 bp
atgatgttgccttgtgggcattcatttggaggcggtggagtacagcaagttattagaatgaaagcttgcttcacctgttctcagtcaatttcagaagacttaattgctccaaatcgctctcttcgaagtgctgtgcaggcattccgtcgtgaagaagagttacacttctatcgctcatccaaaaggaaaagagaaaggtttgaccaggacaaggtatcacaggatcgctcacttgccaaggtatcagatgattcatcatccaaggccctgccaagcaaaatacatgatagtatacatgactttatgtcttacatgacgaagaaagaatgtttgtttgtgaatgttggggcagttgggtcatctttcctcttgagagtaaacgaaaagggatcaatgggtctgaggttctttctcaaagaatccatcttcaagcagagactgttccaagtgaagaaagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box

Protein Analysis

153

Amino Acids

17.48

Weight (kDa)

9.73

Isoelectric Point (pI)

73.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029547)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0369621
rosa_multiflora Rmu_sc0001154.1_g000013

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 292
AciI CCGC 1 cut(s) 33
AclWI GGATC 2 cut(s) 231, 397
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 1 cut(s) 430
AhdI GACNNNNNGTC 1 cut(s) 304
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 430
AlwI GGATC 2 cut(s) 231, 397
AlwNI CAGNNNCTG 1 cut(s) 439
AoxI GGCC 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 64
AsuII TTCGAA 1 cut(s) 124
BarI GAAGNNNNNNTAC 2 cut(s) 144, 176
BbsI GAAGAC 1 cut(s) 102
BccI CCATC 1 cut(s) 431
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 430
BglI GCCNNNNNGGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 206
BmeRI GACNNNNNGTC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 102
Bpu14I TTCGAA 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 391
BsaJI CCNNGG 2 cut(s) 237, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 237, 261
BseGI GGATG 2 cut(s) 176, 257
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 95, 392
BsgI GTGCAG 1 cut(s) 155
BshFI GGCC 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 430
BsmI GAATGC 2 cut(s) 19, 140
BsnI GGCC 1 cut(s) 266
Bsp119I TTCGAA 1 cut(s) 124
Bsp143I GATC 2 cut(s) 223, 389
BspACI CCGC 1 cut(s) 33
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 2 cut(s) 94, 393
BspPI GGATC 2 cut(s) 231, 397
BspT104I TTCGAA 1 cut(s) 124
BssECI CCNNGG 2 cut(s) 237, 261
BssMI GATC 2 cut(s) 223, 389
BssNAI GTATAC 1 cut(s) 293
BssT1I CCWWGG 2 cut(s) 237, 261
Bst1107I GTATAC 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 441
Bst6I CTCTTC 2 cut(s) 126, 150
BstBI TTCGAA 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 67, 138
BstDEI CTNAG 2 cut(s) 81, 401
BstF5I GGATG 2 cut(s) 176, 257
BstKTI GATC 2 cut(s) 226, 392
BstMAI GTCTC 1 cut(s) 430
BstMBI GATC 2 cut(s) 223, 389
BstMWI GCNNNNNNNGC 2 cut(s) 16, 137
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstV2I GAAGAC 1 cut(s) 102
BstZ17I GTATAC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 266
BtsCI GGATG 2 cut(s) 176, 257
Cac8I GCNNGC 2 cut(s) 67, 138
CaiI CAGNNNCTG 1 cut(s) 439
Cfr13I GGNCC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 41
CviAII CATG 3 cut(s) 284, 296, 313
CviJI RGCY 2 cut(s) 65, 266
CviKI_1 RGCY 2 cut(s) 65, 266
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 2 cut(s) 81, 401
DpnI GATC 2 cut(s) 225, 391
DpnII GATC 2 cut(s) 223, 389
DriI GACNNNNNGTC 1 cut(s) 304
Eam1104I CTCTTC 2 cut(s) 126, 150
Eam1105I GACNNNNNGTC 1 cut(s) 304
EarI CTCTTC 2 cut(s) 126, 150
Eco130I CCWWGG 2 cut(s) 237, 261
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 237, 261
ErhI CCWWGG 2 cut(s) 237, 261
FaeI CATG 3 cut(s) 287, 299, 316
FaiI YATR 5 cut(s) 285, 293, 297, 305, 314
FatI CATG 3 cut(s) 283, 295, 312
FblI GTMKAC 1 cut(s) 292
FokI GGATG 2 cut(s) 163, 244
HaeIII GGCC 1 cut(s) 266
Hin1II CATG 3 cut(s) 287, 299, 316
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 2 cut(s) 251, 419
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 2 cut(s) 293, 379
Hpy188I TCNGA 3 cut(s) 94, 247, 402
Hpy188III TCNNGA 2 cut(s) 149, 370
Hpy8I GTNNAC 2 cut(s) 293, 379
Hpy99I CGWCG 1 cut(s) 150
HpyCH4III ACNGT 1 cut(s) 441
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 137
HpyF3I CTNAG 2 cut(s) 81, 401
Hsp92II CATG 3 cut(s) 287, 299, 316
Kzo9I GATC 2 cut(s) 223, 389
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 6 cut(s) 88, 122, 191, 206, 218, 281
MaeIII GTNAC 1 cut(s) 159
MalI GATC 2 cut(s) 225, 391
MboI GATC 2 cut(s) 223, 389
MboII GAAGA 6 cut(s) 107, 113, 164, 167, 331, 418
MluCI AATT 2 cut(s) 87, 102
MnlI CCTC 3 cut(s) 23, 377, 396
MseI TTAA 2 cut(s) 101, 460
MspR9I CCNGG 1 cut(s) 206
Mva1269I GAATGC 2 cut(s) 19, 140
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 16, 137
NdeII GATC 2 cut(s) 223, 389
NlaIII CATG 3 cut(s) 287, 299, 316
NspV TTCGAA 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PctI GAATGC 2 cut(s) 19, 140
PfeI GAWTC 2 cut(s) 251, 419
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspPI GGNCC 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 439
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 101, 460
Sau3AI GATC 2 cut(s) 223, 389
Sau96I GGNCC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 206
SetI ASST 6 cut(s) 67, 77, 200, 216, 243, 407
SfuI TTCGAA 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 370
SmoI CTYRAG 1 cut(s) 370
Sse9I AATT 2 cut(s) 87, 102
SsiI CCGC 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 2 cut(s) 237, 261
TaaI ACNGT 1 cut(s) 441
TaqI TCGA 1 cut(s) 124
TasI AATT 2 cut(s) 87, 102
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 2 cut(s) 251, 419
Tru1I TTAA 2 cut(s) 101, 460
Tru9I TTAA 2 cut(s) 101, 460
TspDTI ATGAA 3 cut(s) 12, 74, 243
TspGWI ACGGA 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.