Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024762

Physical Location & Seq

Genomic Coordinates Reverse (-)

65013223 .. 65014880

Gene Structure 1658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGATCTTCCTGGCATCTTTCGGTCTCTGCTTGCCATTGGTGATGGCTGTTGTATATCTCTCAACGTCATCAAAACATACAGTCAATTATGTTATGCATCAAACATTGTCCTCTATGAAGCATTGTCTGGCTCCAAGCGAAGTGATTGCTGTCTTCATAAAGGCTGCTGAGTATATGAAAATTCCATTCGCAGAATTGTTGATTCAAGCACAATTAACTCGTGCGTCGGGATCTTTATCTCCATCTCTGCAAGGTGATTTAAGACGTGTTCTGGAACATGCTCCCCGCCTCCTCAAAGAATTGATGAAGGCTGATTTCTTCATTTCATGTCTTAGATTAGAAGCTTCGGAAGCAATGACACTTGTTCCACGCAATGCTGAGGGGCAGGGATGGCTGAGTGCAGCAATTGGGGTGGTGGAACTTTCTCAGTGTATCATTCAGGCAGTTCCTCTTGGCAAAAGCAAAGTTACTGGAGGATCCAGGGAAGGCAGTGCGCCCTTTCTGCAGCTACCACATTTTAGTGAGGTTAGAATGTTTCAGGAGCTGGAAGACCGTGCTGACTTACTTTCTCAAACTGCTGGGTTCTCTGCCACTCAAGTACAAGATGTTGAGATGGTATTGACAAGAATGCCTTCAATATCAATAGAAGTTAAATGCGAGACTGAAGGCAAAGAGGATATACAAGAGAGTCACATTGTCATATTTCAAGCTTCAGTGACATGCACTAAAATGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001655 GO:0001889 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0007568 GO:0008104 GO:0008150 GO:0008152 GO:0010259 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048513 GO:0048731 GO:0048732 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061008 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071944 GO:0072001 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 map03060 map04141

Pfam Domains

Protein Families

DnaJ Sec63

Protein Analysis

245

Amino Acids

26.95

Weight (kDa)

6.09

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024762)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378581
rosa_laevigata	RLG00000026421
rosa_samantha	Rh1AG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	3 cut(s)	238, 471, 484
AcsI	RAATTY	1 cut(s)	180
AcuI	CTGAAG	2 cut(s)	684, 696
AfaI	GTAC	1 cut(s)	600
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	206, 636, 707
AjiI	CACGTC	1 cut(s)	266
AjnI	CCWGG	2 cut(s)	9, 479
AluBI	AGCT	4 cut(s)	344, 508, 544, 710
AluI	AGCT	4 cut(s)	344, 508, 544, 710
Alw26I	GTCTC	2 cut(s)	29, 653
AlwI	GGATC	3 cut(s)	238, 471, 484
AlwNI	CAGNNNCTG	1 cut(s)	544
ApeKI	GCWGC	3 cut(s)	164, 401, 505
ApoI	RAATTY	1 cut(s)	180
Asp700I	GAANNNNTTC	1 cut(s)	631
AspLEI	GCGC	1 cut(s)	496
AsuHPI	GGTGA	2 cut(s)	52, 266
BamHI	GGATCC	1 cut(s)	476
BauI	CACGAG	1 cut(s)	219
BbsI	GAAGAC	2 cut(s)	145, 555
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	3 cut(s)	151, 413, 517
BccI	CCATC	4 cut(s)	37, 250, 384, 607
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	2 cut(s)	11, 481
BcoDI	GTCTC	2 cut(s)	29, 653
BfmI	CTRYAG	1 cut(s)	503
BisI	GCNGC	3 cut(s)	165, 402, 506
BlsI	GCNGC	3 cut(s)	166, 403, 507
Bme1390I	CCNGG	2 cut(s)	11, 481
BmgBI	CACGTC	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	132, 478
BmrFI	CCNGG	2 cut(s)	11, 481
BmsI	GCATC	2 cut(s)	23, 106
BpiI	GAAGAC	2 cut(s)	145, 555
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	579
BsaBI	GATNNNNATC	1 cut(s)	235
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	480
Bse1I	ACTGG	1 cut(s)	475
Bse3DI	GCAATG	2 cut(s)	360, 379
Bse8I	GATNNNNATC	1 cut(s)	235
BseBI	CCWGG	2 cut(s)	11, 481
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	1 cut(s)	395
BseJI	GATNNNNATC	1 cut(s)	235
BseMI	GCAATG	2 cut(s)	360, 379
BseMII	CTCAG	4 cut(s)	159, 369, 386, 440
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	3 cut(s)	151, 413, 517
BseYI	CCCAGC	1 cut(s)	578
BsgI	GTGCAG	1 cut(s)	420
BsmAI	GTCTC	2 cut(s)	29, 653
BsmI	GAATGC	1 cut(s)	633
Bso31I	GGTCTC	1 cut(s)	29
Bsp143I	GATC	3 cut(s)	3, 230, 476
BspACI	CCGC	1 cut(s)	286
BspCNI	CTCAG	4 cut(s)	160, 370, 387, 439
BspLI	GGNNCC	2 cut(s)	132, 478
BspMAI	CTGCAG	1 cut(s)	507
BspPI	GGATC	3 cut(s)	238, 471, 484
BspTNI	GGTCTC	1 cut(s)	29
BsrDI	GCAATG	2 cut(s)	360, 379
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	3 cut(s)	3, 230, 476
BssSI	CACGAG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	11, 481
Bst4CI	ACNGT	2 cut(s)	82, 554
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	5 cut(s)	168, 332, 378, 395, 426
BstF5I	GGATG	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	3 cut(s)	6, 233, 479
BstMAI	GTCTC	2 cut(s)	29, 653
BstMBI	GATC	3 cut(s)	3, 230, 476
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 391, 502
BstNI	CCWGG	2 cut(s)	11, 481
BstNSI	RCATGY	2 cut(s)	281, 723
BstSCI	CCNGG	2 cut(s)	9, 479
BstSFI	CTRYAG	1 cut(s)	503
BstV1I	GCAGC	3 cut(s)	151, 413, 517
BstV2I	GAAGAC	2 cut(s)	145, 555
BstX2I	RGATCY	2 cut(s)	230, 476
BstYI	RGATCY	2 cut(s)	230, 476
BtrI	CACGTC	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	395
BtsI	GCAGTG	1 cut(s)	496
BtsIMutI	CAGTG	3 cut(s)	434, 496, 720
Cac8I	GCNNGC	1 cut(s)	32
CaiI	CAGNNNCTG	1 cut(s)	544
CfoI	GCGC	1 cut(s)	496
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	599
CspCI	CAANNNNNGTGG	2 cut(s)	393, 428
CviAII	CATG	3 cut(s)	278, 327, 720
CviJI	RGCY	9 cut(s)	47, 131, 164, 311, 344, 394, 508, 544, 710
CviKI_1	RGCY	9 cut(s)	47, 131, 164, 311, 344, 394, 508, 544, 710
CviQI	GTAC	1 cut(s)	599
DdeI	CTNAG	5 cut(s)	168, 332, 378, 395, 426
DpnI	GATC	3 cut(s)	5, 232, 478
DpnII	GATC	3 cut(s)	3, 230, 476
Eco31I	GGTCTC	1 cut(s)	29
Eco57I	CTGAAG	2 cut(s)	684, 696
EcoRII	CCWGG	2 cut(s)	9, 479
EcoT22I	ATGCAT	1 cut(s)	99
FaeI	CATG	3 cut(s)	281, 330, 723
FalI	AAGNNNNNCTT	2 cut(s)	616, 648
FatI	CATG	3 cut(s)	277, 326, 719
FauI	CCCGC	1 cut(s)	293
Fnu4HI	GCNGC	3 cut(s)	165, 402, 506
FokI	GGATG	1 cut(s)	402
Fsp4HI	GCNGC	3 cut(s)	165, 402, 506
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	3 cut(s)	165, 402, 506
GsaI	CCCAGC	1 cut(s)	582
GsuI	CTGGAG	1 cut(s)	492
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	3 cut(s)	281, 330, 723
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HindIII	AAGCTT	2 cut(s)	342, 708
HinfI	GANTC	2 cut(s)	202, 688
HphI	GGTGA	2 cut(s)	52, 266
Hpy188I	TCNGA	1 cut(s)	349
Hpy188III	TCNNGA	3 cut(s)	228, 272, 539
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	4 cut(s)	301, 479, 642, 659
HpyCH4III	ACNGT	2 cut(s)	82, 554
HpyCH4IV	ACGT	2 cut(s)	65, 265
HpyCH4V	TGCA	5 cut(s)	97, 250, 401, 505, 723
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 391, 502
HpyF3I	CTNAG	5 cut(s)	168, 332, 378, 395, 426
HpySE526I	ACGT	2 cut(s)	65, 265
Hsp92II	CATG	3 cut(s)	281, 330, 723
HspAI	GCGC	1 cut(s)	494
Kzo9I	GATC	3 cut(s)	3, 230, 476
LmnI	GCTCC	3 cut(s)	136, 286, 541
Lsp1109I	GCAGC	3 cut(s)	151, 413, 517
LweI	GCATC	2 cut(s)	23, 106
MaeII	ACGT	2 cut(s)	65, 265
MaeIII	GTNAC	3 cut(s)	466, 689, 715
MalI	GATC	3 cut(s)	5, 232, 478
MboI	GATC	3 cut(s)	3, 230, 476
MboII	GAAGA	3 cut(s)	145, 310, 560
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	2 cut(s)	230, 476
MluCI	AATT	6 cut(s)	85, 180, 194, 212, 299, 405
MlyI	GAGTC	1 cut(s)	697
MnlI	CCTC	8 cut(s)	121, 299, 302, 373, 459, 467, 517, 667
Mph1103I	ATGCAT	1 cut(s)	99
MroXI	GAANNNNTTC	1 cut(s)	631
MseI	TTAA	3 cut(s)	215, 260, 651
MslI	CAYNNNNRTG	2 cut(s)	519, 728
MspR9I	CCNGG	2 cut(s)	11, 481
MunI	CAATTG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	633
MvaI	CCWGG	2 cut(s)	11, 481
MwoI	GCNNNNNNNGC	3 cut(s)	350, 391, 502
NdeII	GATC	3 cut(s)	3, 230, 476
NlaIII	CATG	3 cut(s)	281, 330, 723
NlaIV	GGNNCC	2 cut(s)	132, 478
NmuCI	GTSAC	2 cut(s)	689, 715
NsiI	ATGCAT	1 cut(s)	99
NspI	RCATGY	2 cut(s)	281, 723
PctI	GAATGC	1 cut(s)	633
PdmI	GAANNNNTTC	1 cut(s)	631
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	3 cut(s)	166, 403, 507
PleI	GAGTC	1 cut(s)	696
PpsI	GAGTC	1 cut(s)	696
Psp6I	CCWGG	2 cut(s)	9, 479
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	2 cut(s)	9, 479
PspN4I	GGNNCC	2 cut(s)	132, 478
PstI	CTGCAG	1 cut(s)	507
PstNI	CAGNNNCTG	1 cut(s)	544
PsuI	RGATCY	2 cut(s)	230, 476
RsaI	GTAC	1 cut(s)	600
RsaNI	GTAC	1 cut(s)	599
RseI	CAYNNNNRTG	2 cut(s)	519, 728
SaqAI	TTAA	3 cut(s)	215, 260, 651
SatI	GCNGC	3 cut(s)	165, 402, 506
Sau3AI	GATC	3 cut(s)	3, 230, 476
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	2 cut(s)	11, 481
SetI	ASST	8 cut(s)	68, 256, 268, 346, 510, 528, 546, 712
SfaNI	GCATC	2 cut(s)	23, 106
SfcI	CTRYAG	1 cut(s)	503
SmiMI	CAYNNNNRTG	2 cut(s)	519, 728
SmlI	CTYRAG	1 cut(s)	594
SmoI	CTYRAG	1 cut(s)	594
Sse9I	AATT	6 cut(s)	85, 180, 194, 212, 299, 405
SsiI	CCGC	1 cut(s)	286
StyD4I	CCNGG	2 cut(s)	9, 479
TaaI	ACNGT	2 cut(s)	82, 554
TaiI	ACGT	2 cut(s)	68, 268
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	6 cut(s)	85, 180, 194, 212, 299, 405
TatI	WGTACW	1 cut(s)	598
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	3 cut(s)	215, 260, 651
Tru9I	TTAA	3 cut(s)	215, 260, 651
TscAI	CASTG	3 cut(s)	434, 496, 720
TseFI	GTSAC	2 cut(s)	689, 715
TseI	GCWGC	3 cut(s)	164, 401, 505
Tsp45I	GTSAC	2 cut(s)	689, 715
TspDTI	ATGAA	6 cut(s)	131, 145, 191, 310, 315, 320
TspRI	CASTG	3 cut(s)	434, 496, 720
XapI	RAATTY	1 cut(s)	180
XceI	RCATGY	2 cut(s)	281, 723
XmnI	GAANNNNTTC	1 cut(s)	631
Zsp2I	ATGCAT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.