Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0024762

Physical Location & Seq

Genomic Coordinates Forward (+)

2940468 .. 2942672

Gene Structure 2205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026421

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGTTTAAGCAATTTGAAGTTTACTCCAACAGGGGCAAAAAAATTATCTTCCTGGCATCTTTCGGTCTCTGCTTGCCATTGGTGATGGCTGTTGTATGTCTCTCAACGTCATTAAAACATACAGTCAATTATGTTATGCATCAAAGCGAAGTGATTGCTGTCTTCATAAAGGCTCCTGAGTATGTGAAAATTCCATTCGTGGAACCGACAATGAACCCCTTACAGAAGCTTTTTATGCTACTCAGGTCAGGAGCAGAATTGTTGATTCAAGCACAATTATCTCGTGCGTCGGGATCTTTATCTCCATCTCTGCAAGGTGATTTAAGACGTGTTCTGGAACATGCTTCCTGCCTCCTCAAAGAATTGATGAAGATGACACTTGTTCCACGCAATGCTGAGGGGCAGGGATGGCTGAGTGCAGCAATTGGGGTGGTGGAACTTTCTCACTGTATCATTCTGGCAGTTCCTCTTGGCAAAAGCAAAGTTACTGGAGGATCCAGTAAAGGCCATGCGCCCTTTCTGCAGCTACCACATTTTAGTGAGGTTAGAATGTTTCTGGAGCTTAAAGACTCTGCTGACTTACTTTCTCGAACTGCTGGGTTCTCTGCCAGTCAAGTACAAGATGTTGAGATGGTATTGACAAGGATGCCTTCAATATCAATAGAAGTTAAATACAGCTCCTCCAATGACATTTGGCTTTCGCAGAAGGAAAATTTCATGGACCAAGCTGAGGCTATTACCACCGGTTCAAATGTAGTTAAGGATATATTGAAGGGTTCAGGAGCAACTAGGGAGGAAATTAGTGCTGCTGTCAAAGAAGCAGTTGAGAAGGTTGTGATCAAAAGACAAATACAAGAGAACGAAGATGAGGAGGACCAAAACAAAGAACATGTTAGGGTTCTATCGGAAGAATTGAAACAGCCACCACAGCATGTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001655 GO:0001889 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0007568 GO:0008104 GO:0008150 GO:0008152 GO:0010259 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048513 GO:0048731 GO:0048732 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061008 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071944 GO:0072001 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 map03060 map04141

Pfam Domains

Protein Families

DnaJ Sec63

Protein Analysis

314

Amino Acids

34.67

Weight (kDa)

6.72

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024762)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378581
rosa_laevigata	RLG00000026421
rosa_samantha	Rh1AG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	301, 489, 502
AcsI	RAATTY	2 cut(s)	189, 712
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	1 cut(s)	730
AflIII	ACRYGT	2 cut(s)	328, 889
AgeI	ACCGGT	1 cut(s)	743
AgsI	TTSAA	6 cut(s)	17, 269, 654, 750, 772, 916
AjiI	CACGTC	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	5 cut(s)	229, 526, 562, 678, 728
AluI	AGCT	5 cut(s)	229, 526, 562, 678, 728
Alw26I	GTCTC	2 cut(s)	71, 104
AlwI	GGATC	3 cut(s)	301, 489, 502
AoxI	GGCC	1 cut(s)	505
ApeKI	GCWGC	3 cut(s)	419, 523, 806
ApoI	RAATTY	2 cut(s)	189, 712
AsiGI	ACCGGT	1 cut(s)	743
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	2 cut(s)	721, 874
AsuHPI	GGTGA	2 cut(s)	94, 329
AvaII	GGWCC	2 cut(s)	721, 874
BamHI	GGATCC	1 cut(s)	494
BauI	CACGAG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	154
BbvCI	CCTCAGC	2 cut(s)	396, 729
BbvI	GCAGC	3 cut(s)	431, 535, 793
BccI	CCATC	4 cut(s)	79, 313, 402, 625
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	1 cut(s)	53
BclI	TGATCA	1 cut(s)	837
BcoDI	GTCTC	2 cut(s)	71, 104
BfaI	CTAG	1 cut(s)	789
BfmI	CTRYAG	1 cut(s)	521
BisI	GCNGC	3 cut(s)	420, 524, 807
BlsI	GCNGC	3 cut(s)	421, 525, 808
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	2 cut(s)	721, 874
BmgBI	CACGTC	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	721, 874
BmiI	GGNNCC	3 cut(s)	174, 204, 496
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	3 cut(s)	65, 148, 636
BpiI	GAAGAC	1 cut(s)	154
BpmI	CTGGAG	2 cut(s)	510, 578
Bpu10I	CCTNAGC	2 cut(s)	396, 729
BsaBI	GATNNNNATC	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	743
BsaXI	ACNNNNNCTCC	2 cut(s)	665, 695
Bsc4I	CCNNNNNNNGG	1 cut(s)	730
Bse118I	RCCGGY	1 cut(s)	743
Bse1I	ACTGG	3 cut(s)	493, 498, 609
Bse3DI	GCAATG	1 cut(s)	397
Bse8I	GATNNNNATC	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	53
BseGI	GGATG	2 cut(s)	413, 651
BseJI	GATNNNNATC	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	730
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	5 cut(s)	168, 256, 387, 404, 720
BseNI	ACTGG	3 cut(s)	493, 498, 609
BseRI	GAGGAG	3 cut(s)	344, 670, 884
BseXI	GCAGC	3 cut(s)	431, 535, 793
BseYI	CCCAGC	1 cut(s)	596
BsgI	GTGCAG	1 cut(s)	438
BshFI	GGCC	1 cut(s)	507
BshTI	ACCGGT	1 cut(s)	743
BsiSI	CCGG	1 cut(s)	744
BslI	CCNNNNNNNGG	1 cut(s)	730
BsmAI	GTCTC	2 cut(s)	71, 104
BsnI	GGCC	1 cut(s)	507
Bso31I	GGTCTC	1 cut(s)	71
Bsp143I	GATC	3 cut(s)	293, 494, 837
BspANI	GGCC	1 cut(s)	507
BspCNI	CTCAG	5 cut(s)	169, 255, 388, 405, 721
BspLI	GGNNCC	3 cut(s)	174, 204, 496
BspMAI	CTGCAG	1 cut(s)	525
BspPI	GGATC	3 cut(s)	301, 489, 502
BspTNI	GGTCTC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	397
BsrFI	RCCGGY	1 cut(s)	743
BsrI	ACTGG	3 cut(s)	493, 498, 609
BssAI	RCCGGY	1 cut(s)	743
BssMI	GATC	3 cut(s)	293, 494, 837
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	124, 449
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	5 cut(s)	177, 242, 396, 413, 729
BstF5I	GGATG	2 cut(s)	413, 651
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	3 cut(s)	296, 497, 840
BstMAI	GTCTC	2 cut(s)	71, 104
BstMBI	GATC	3 cut(s)	293, 494, 837
BstMWI	GCNNNNNNNGC	4 cut(s)	235, 409, 520, 928
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	3 cut(s)	344, 893, 935
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	521
BstV1I	GCAGC	3 cut(s)	431, 535, 793
BstV2I	GAAGAC	1 cut(s)	154
BstX2I	RGATCY	2 cut(s)	293, 494
BstYI	RGATCY	2 cut(s)	293, 494
BsuRI	GGCC	1 cut(s)	507
BtrI	CACGTC	1 cut(s)	329
BtsCI	GGATG	2 cut(s)	413, 651
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	74
CfoI	GCGC	1 cut(s)	514
Cfr10I	RCCGGY	1 cut(s)	743
Cfr13I	GGNCC	2 cut(s)	721, 874
CseI	GACGC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	617
CspAI	ACCGGT	1 cut(s)	743
CspCI	CAANNNNNGTGG	2 cut(s)	411, 446
CviAII	CATG	5 cut(s)	341, 509, 718, 890, 932
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	5 cut(s)	177, 242, 396, 413, 729
DpnI	GATC	3 cut(s)	295, 496, 839
DpnII	GATC	3 cut(s)	293, 494, 837
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	2 cut(s)	721, 874
EcoRII	CCWGG	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	141
FaeI	CATG	5 cut(s)	344, 512, 721, 893, 935
FalI	AAGNNNNNCTT	2 cut(s)	634, 666
FatI	CATG	5 cut(s)	340, 508, 717, 889, 931
FbaI	TGATCA	1 cut(s)	837
Fnu4HI	GCNGC	3 cut(s)	420, 524, 807
FokI	GGATG	2 cut(s)	420, 658
Fsp4HI	GCNGC	3 cut(s)	420, 524, 807
FspBI	CTAG	1 cut(s)	789
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	3 cut(s)	420, 524, 807
GsaI	CCCAGC	1 cut(s)	600
GsuI	CTGGAG	2 cut(s)	510, 578
HaeIII	GGCC	1 cut(s)	507
HapII	CCGG	1 cut(s)	744
HgaI	GACGC	1 cut(s)	276
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	5 cut(s)	344, 512, 721, 893, 935
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	2 cut(s)	265, 569
HpaII	CCGG	1 cut(s)	744
HphI	GGTGA	2 cut(s)	94, 329
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	907
Hpy188III	TCNNGA	7 cut(s)	176, 249, 291, 335, 557, 588, 780
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	4 cut(s)	660, 700, 766, 823
HpyCH4III	ACNGT	2 cut(s)	124, 449
HpyCH4IV	ACGT	2 cut(s)	107, 328
HpyCH4V	TGCA	4 cut(s)	139, 313, 419, 523
HpyF10VI	GCNNNNNNNGC	4 cut(s)	235, 409, 520, 928
HpyF3I	CTNAG	5 cut(s)	177, 242, 396, 413, 729
HpySE526I	ACGT	2 cut(s)	107, 328
Hsp92II	CATG	5 cut(s)	344, 512, 721, 893, 935
HspAI	GCGC	1 cut(s)	512
Ksp22I	TGATCA	1 cut(s)	837
Kzo9I	GATC	3 cut(s)	293, 494, 837
LmnI	GCTCC	5 cut(s)	178, 251, 559, 683, 782
Lsp1109I	GCAGC	3 cut(s)	431, 535, 793
LweI	GCATC	3 cut(s)	65, 148, 636
MaeI	CTAG	1 cut(s)	789
MaeII	ACGT	2 cut(s)	107, 328
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	3 cut(s)	295, 496, 839
MboI	GATC	3 cut(s)	293, 494, 837
MboII	GAAGA	5 cut(s)	40, 154, 382, 875, 920
MfeI	CAATTG	1 cut(s)	423
MflI	RGATCY	2 cut(s)	293, 494
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	1 cut(s)	51
Mph1103I	ATGCAT	1 cut(s)	141
MseI	TTAA	6 cut(s)	6, 113, 323, 564, 669, 759
MslI	CAYNNNNRTG	1 cut(s)	537
MspI	CCGG	1 cut(s)	744
MspR9I	CCNGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	4 cut(s)	235, 409, 520, 928
NdeII	GATC	3 cut(s)	293, 494, 837
NlaIII	CATG	5 cut(s)	344, 512, 721, 893, 935
NlaIV	GGNNCC	3 cut(s)	174, 204, 496
NsiI	ATGCAT	1 cut(s)	141
NspI	RCATGY	3 cut(s)	344, 893, 935
PciI	ACATGT	1 cut(s)	889
PfeI	GAWTC	1 cut(s)	265
PinAI	ACCGGT	1 cut(s)	743
PkrI	GCNGC	3 cut(s)	421, 525, 808
PleI	GAGTC	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	563
PscI	ACATGT	1 cut(s)	889
Psp6I	CCWGG	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	174, 204, 496
PspPI	GGNCC	2 cut(s)	721, 874
PstI	CTGCAG	1 cut(s)	525
PsuI	RGATCY	2 cut(s)	293, 494
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
RseI	CAYNNNNRTG	1 cut(s)	537
SaqAI	TTAA	6 cut(s)	6, 113, 323, 564, 669, 759
SatI	GCNGC	3 cut(s)	420, 524, 807
Sau3AI	GATC	3 cut(s)	293, 494, 837
Sau96I	GGNCC	2 cut(s)	721, 874
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	1 cut(s)	53
SfaNI	GCATC	3 cut(s)	65, 148, 636
SfcI	CTRYAG	1 cut(s)	521
SinI	GGWCC	2 cut(s)	721, 874
SmiMI	CAYNNNNRTG	1 cut(s)	537
SspMI	CTAG	1 cut(s)	789
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	124, 449
TaiI	ACGT	2 cut(s)	110, 331
TaqI	TCGA	1 cut(s)	589
TaqII	GACCGA	1 cut(s)	53
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	6 cut(s)	6, 113, 323, 564, 669, 759
Tru9I	TTAA	6 cut(s)	6, 113, 323, 564, 669, 759
TscAI	CASTG	1 cut(s)	452
TseI	GCWGC	3 cut(s)	419, 523, 806
TspDTI	ATGAA	4 cut(s)	154, 227, 383, 706
TspRI	CASTG	1 cut(s)	452
VpaK11BI	GGWCC	2 cut(s)	721, 874
XapI	RAATTY	2 cut(s)	189, 712
XceI	RCATGY	3 cut(s)	344, 893, 935
XspI	CTAG	1 cut(s)	789
Zsp2I	ATGCAT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.