Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0029515

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCAGCAACCGCAACCTCCGGGGCAAGCCAAACGATACGGGGTGTCAAAAATACCGTAGAGGAGAAGCTTAAGTTTGTGACCTCGGAATCTGAAGGTATAGAGCCGATAATGAGCTTCGACGATATGTGCCTTAAAGAAGAGCTCCTCCGAGGCATCTACAACCATGGCTTTGAGAAGCCCTCAGCTATCCAGCAACGGGCCATCAGACCCATTATTGAGCGCAGGGATGTTATCGCCCAGGCGCAGTCCGGTACAGGAAAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

89

Amino Acids

9.78

Weight (kDa)

6.57

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029515)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503711
rosa_samantha	Rh2AG617100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	199
AflII	CTTAAG	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	4 cut(s)	70, 117, 145, 188
AluI	AGCT	4 cut(s)	70, 117, 145, 188
Alw21I	GWGCWC	1 cut(s)	147
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	2 cut(s)	225, 247
AspS9I	GGNCC	1 cut(s)	201
AsuC2I	CCSGG	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	147
BbvCI	CCTCAGC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	242
BcnI	CCSGG	1 cut(s)	22
BfrI	CTTAAG	1 cut(s)	71
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	22, 242
BmgT120I	GGNCC	1 cut(s)	201
BmrFI	CCNGG	2 cut(s)	22, 242
BmsI	GCATC	1 cut(s)	165
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
Bpu10I	CCTNAGC	1 cut(s)	184
BpuMI	CCSGG	1 cut(s)	22
BsaJI	CCNNGG	5 cut(s)	21, 84, 151, 166, 240
BsaWI	WCCGGW	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	5 cut(s)	21, 84, 151, 166, 240
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	198
BseRI	GAGGAG	2 cut(s)	77, 137
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	21, 252
BslI	CCNNNNNNNGG	1 cut(s)	199
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	197
BspQI	GCTCTTC	1 cut(s)	135
BspTI	CTTAAG	1 cut(s)	71
BssECI	CCNNGG	5 cut(s)	21, 84, 151, 166, 240
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	135
BstAFI	CTTAAG	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	184
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	235
BstHHI	GCGC	2 cut(s)	225, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	20, 240
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	2 cut(s)	225, 247
Cfr13I	GGNCC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	2 cut(s)	167, 267
CviJI	RGCY	9 cut(s)	30, 70, 106, 117, 145, 171, 181, 188, 203
CviKI_1	RGCY	9 cut(s)	30, 70, 106, 117, 145, 171, 181, 188, 203
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	2 cut(s)	170, 270
FaiI	YATR	4 cut(s)	101, 128, 168, 268
FatI	CATG	2 cut(s)	166, 266
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	2 cut(s)	224, 246
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	2 cut(s)	21, 252
HhaI	GCGC	2 cut(s)	225, 247
Hin1II	CATG	2 cut(s)	170, 270
Hin6I	GCGC	2 cut(s)	223, 245
HinP1I	GCGC	2 cut(s)	223, 245
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	21, 252
Hpy188I	TCNGA	4 cut(s)	88, 94, 152, 209
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	184
Hsp92II	CATG	2 cut(s)	170, 270
HspAI	GCGC	2 cut(s)	223, 245
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	150
LpnPI	CCDG	7 cut(s)	34, 206, 211, 227, 243, 254, 265
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	79
MboII	GAAGA	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	147
MnlI	CCTC	6 cut(s)	28, 55, 94, 146, 158, 193
MseI	TTAA	2 cut(s)	72, 135
MspCI	CTTAAG	1 cut(s)	71
MspI	CCGG	2 cut(s)	21, 252
MspR9I	CCNGG	2 cut(s)	22, 242
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	22
NcoI	CCATGG	1 cut(s)	166
NlaIII	CATG	2 cut(s)	170, 270
NmuCI	GTSAC	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	201
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	72, 135
SatI	GCNGC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	201
ScrFI	CCNGG	2 cut(s)	22, 242
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	7 cut(s)	20, 72, 86, 100, 119, 147, 190
SfaNI	GCATC	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SsiI	CCGC	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	20, 240
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	2 cut(s)	72, 135
Tru9I	TTAA	2 cut(s)	72, 135
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	79
Vha464I	CTTAAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.