Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0029515

Physical Location & Seq

Genomic Coordinates Reverse (-)

84131011 .. 84131509

Gene Structure 499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG617100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCAGCAACCGCAACCTCCAGGGCAAGCCAAACGATACGGGGTGTCAAAAACACCTTAGAGGAGAAGCTCAAGTTTGTGACCTCGGAATCTGAAGGTATAGAGCCGATAATGAGCTTCGACGATATGTACCTTAAAGAAGAGCTCCTCCGAGGCATCTACAACCATGGCTTTGAGAAGCCCTCAGCTATCCAGCAACGGGCCATCAGGCCCATTATTGAGCGCAGGGATGTTATCGCCCAGGCGCAGTCCGGTACCGGAAAGACATCAATGATTGCACTCGCCGCTTGCCAAATGGTTGACACCGCCTCCAGAGAGTATGATATCCTTTTCTACCTAAAGGTTATCGCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

118

Amino Acids

13.19

Weight (kDa)

6.59

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	63 - 106	6.7e-09	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0029515)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503711
rosa_samantha	Rh2AG617100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	254
AciI	CCGC	3 cut(s)	12, 285, 306
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	2 cut(s)	131, 256
AfiI	CCNNNNNNNGG	1 cut(s)	199
AjnI	CCWGG	2 cut(s)	20, 240
AluBI	AGCT	4 cut(s)	70, 117, 145, 188
AluI	AGCT	4 cut(s)	70, 117, 145, 188
Alw21I	GWGCWC	1 cut(s)	147
AoxI	GGCC	2 cut(s)	201, 209
ApeKI	GCWGC	1 cut(s)	5
Asp718I	GGTACC	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	225, 247
AspS9I	GGNCC	2 cut(s)	201, 210
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	147
BbvCI	CCTCAGC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	212
BciT130I	CCWGG	2 cut(s)	22, 242
BisI	GCNGC	2 cut(s)	6, 285
BlsI	GCNGC	2 cut(s)	7, 286
Bme1390I	CCNGG	2 cut(s)	22, 242
BmgT120I	GGNCC	2 cut(s)	201, 210
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	2 cut(s)	22, 242
BmsI	GCATC	1 cut(s)	165
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpmI	CTGGAG	2 cut(s)	4, 295
Bpu10I	CCTNAGC	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	56
BsaJI	CCNNGG	5 cut(s)	21, 84, 151, 166, 240
BsaWI	WCCGGW	2 cut(s)	251, 257
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	22, 242
BseDI	CCNNGG	5 cut(s)	21, 84, 151, 166, 240
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	198
BseRI	GAGGAG	2 cut(s)	77, 137
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	2 cut(s)	203, 211
BshNI	GGYRCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	252, 258
BslI	CCNNNNNNNGG	1 cut(s)	199
BsnI	GGCC	2 cut(s)	203, 211
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	3 cut(s)	12, 285, 306
BspANI	GGCC	2 cut(s)	203, 211
BspCNI	CTCAG	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	256
BspQI	GCTCTTC	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	254
BssECI	CCNNGG	5 cut(s)	21, 84, 151, 166, 240
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	2 cut(s)	22, 242
Bst6I	CTCTTC	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	28, 289
BstDEI	CTNAG	2 cut(s)	58, 184
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	235
BstHHI	GCGC	2 cut(s)	225, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 284
BstNI	CCWGG	2 cut(s)	22, 242
BstSCI	CCNGG	2 cut(s)	20, 240
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	203, 211
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	28, 289
CfoI	GCGC	2 cut(s)	225, 247
Cfr13I	GGNCC	2 cut(s)	201, 210
Csp6I	GTAC	2 cut(s)	130, 255
CviAII	CATG	1 cut(s)	167
CviQI	GTAC	2 cut(s)	130, 255
DdeI	CTNAG	2 cut(s)	58, 184
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	147
Eco32I	GATATC	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	20, 240
EcoRV	GATATC	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	1 cut(s)	170
FaiI	YATR	4 cut(s)	101, 128, 168, 321
FatI	CATG	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	6, 285
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	2 cut(s)	6, 285
GlaI	GCGC	2 cut(s)	224, 246
GluI	GCNGC	2 cut(s)	6, 285
GsuI	CTGGAG	2 cut(s)	4, 295
HaeIII	GGCC	2 cut(s)	203, 211
HapII	CCGG	2 cut(s)	252, 258
HhaI	GCGC	2 cut(s)	225, 247
Hin1II	CATG	1 cut(s)	170
Hin6I	GCGC	2 cut(s)	223, 245
HinP1I	GCGC	2 cut(s)	223, 245
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	252, 258
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	3 cut(s)	88, 94, 152
Hpy188III	TCNNGA	1 cut(s)	312
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	89
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 284
HpyF3I	CTNAG	2 cut(s)	58, 184
Hsp92II	CATG	1 cut(s)	170
HspAI	GCGC	2 cut(s)	223, 245
KpnI	GGTACC	1 cut(s)	258
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	150
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	79
MboII	GAAGA	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	1 cut(s)	352
MnlI	CCTC	7 cut(s)	28, 55, 94, 146, 158, 193, 319
MseI	TTAA	1 cut(s)	135
MspI	CCGG	2 cut(s)	252, 258
MspR9I	CCNGG	2 cut(s)	22, 242
MvaI	CCWGG	2 cut(s)	22, 242
MwoI	GCNNNNNNNGC	2 cut(s)	11, 284
NcoI	CCATGG	1 cut(s)	166
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	7, 286
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	20, 240
PspGI	CCWGG	2 cut(s)	20, 240
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	2 cut(s)	201, 210
RsaI	GTAC	2 cut(s)	131, 256
RsaNI	GTAC	2 cut(s)	130, 255
SacI	GAGCTC	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	2 cut(s)	6, 285
Sau96I	GGNCC	2 cut(s)	201, 210
ScrFI	CCNGG	2 cut(s)	22, 242
SduI	GDGCHC	1 cut(s)	147
SfaNI	GCATC	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	1 cut(s)	352
SsiI	CCGC	3 cut(s)	12, 285, 306
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	20, 240
StyI	CCWWGG	1 cut(s)	166
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	352
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.