Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0024717

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGTCTTTTTCAGTGGATGCTTGGTGGGGATTGGTTGAGAAAGACGGACCTTCCAAGTACAATTGGGAAGGGTATGCAGAGCATGTGAACTTTGTCCAGAAGCATGGCTTGAAGATTCAAGTTGTCATGTCTTTCCATCAATGTGGAGGAAATGTTGGAGACTCATGCAGTTATGACATGTTTAAACTTAATGTCGGGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

67

Amino Acids

7.57

Weight (kDa)

5.78

Isoelectric Point (pI)

17.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	4 - 58	6e-28	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024717)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c22g0500411
rosa_samantha	Rh7DG237500 Rh7DG237800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	2 cut(s)	112, 119
Alw26I	GTCTC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	47
BccI	CCATC	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmsI	GCATC	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
BseGI	GGATG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	153
BstNSI	RCATGY	2 cut(s)	86, 181
BstXI	CCANNNNNNTGG	2 cut(s)	104, 143
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	5 cut(s)	83, 104, 127, 165, 178
CviJI	RGCY	1 cut(s)	108
CviKI_1	RGCY	1 cut(s)	108
CviQI	GTAC	1 cut(s)	58
DraI	TTTAAA	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	47
FaeI	CATG	5 cut(s)	86, 107, 130, 168, 181
FaiI	YATR	8 cut(s)	75, 84, 105, 128, 166, 174, 179, 202
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	5 cut(s)	82, 103, 126, 164, 177
FokI	GGATG	1 cut(s)	29
Hin1II	CATG	5 cut(s)	86, 107, 130, 168, 181
HinfI	GANTC	2 cut(s)	115, 161
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188III	TCNNGA	2 cut(s)	97, 196
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	60, 62
HpyCH4V	TGCA	2 cut(s)	77, 168
Hsp92II	CATG	5 cut(s)	86, 107, 130, 168, 181
LpnPI	CCDG	1 cut(s)	110
LweI	GCATC	1 cut(s)	7
MboII	GAAGA	1 cut(s)	124
MfeI	CAATTG	1 cut(s)	61
MluCI	AATT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	1 cut(s)	140
MseI	TTAA	2 cut(s)	183, 189
MslI	CAYNNNNRTG	1 cut(s)	141
MssI	GTTTAAAC	1 cut(s)	184
MunI	CAATTG	1 cut(s)	61
NlaIII	CATG	5 cut(s)	86, 107, 130, 168, 181
NspI	RCATGY	2 cut(s)	86, 181
PciI	ACATGT	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	115
PleI	GAGTC	1 cut(s)	155
PmeI	GTTTAAAC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	155
PscI	ACATGT	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	47
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	183, 189
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	155
SetI	ASST	1 cut(s)	52
SfaNI	GCATC	1 cut(s)	7
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	1 cut(s)	61
TasI	AATT	1 cut(s)	61
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	183, 189
Tru9I	TTAA	2 cut(s)	183, 189
TscAI	CASTG	1 cut(s)	18
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	47
XceI	RCATGY	2 cut(s)	86, 181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.