Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0024717

Physical Location & Seq

Genomic Coordinates Reverse (-)

23956787 .. 23960947

Gene Structure 4161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG237800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGTCGCATCCGGGCAAAGAGTTCCCTGCAAGAAGCACAGCTCTTCCAGGAAAGAATCAGGTGGATGCTTGGTGGGGATTGGTCGAGAAAGACGGACCTTCCAAGTACAATTGGGAAGGGTATGCAGAGCATGTGAACTTTGTCCAGAAGCATGGCTTGAAGATTCAAGTTGTCATGTCTTTCCATCAATGTGGAGGAAATGTTGGAGACTCATGCAGTTATGACATGTTTAAACTTAATGTCGGGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

83

Amino Acids

9.26

Weight (kDa)

6.89

Isoelectric Point (pI)

24.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	20 - 74	1.3e-27	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0024717)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c22g0500411
rosa_samantha	Rh7DG237500 Rh7DG237800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	160, 167
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	95
AsuC2I	CCSGG	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	95
BccI	CCATC	1 cut(s)	192
BciT130I	CCWGG	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	201
Bme1390I	CCNGG	2 cut(s)	12, 48
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	95
BmrFI	CCNGG	2 cut(s)	12, 48
BmsI	GCATC	2 cut(s)	16, 55
BpuMI	CCSGG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
BseBI	CCWGG	1 cut(s)	48
BseGI	GGATG	2 cut(s)	7, 70
BsiSI	CCGG	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	201
BspQI	GCTCTTC	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	7, 70
BstMAI	GTCTC	1 cut(s)	201
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	2 cut(s)	134, 229
BstSCI	CCNGG	2 cut(s)	10, 46
BstXI	CCANNNNNNTGG	2 cut(s)	152, 191
BtsCI	GGATG	2 cut(s)	7, 70
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	5 cut(s)	131, 152, 175, 213, 226
CviJI	RGCY	2 cut(s)	41, 156
CviKI_1	RGCY	2 cut(s)	41, 156
CviQI	GTAC	1 cut(s)	106
DraI	TTTAAA	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	46
FaeI	CATG	5 cut(s)	134, 155, 178, 216, 229
FaiI	YATR	8 cut(s)	123, 132, 153, 176, 214, 222, 227, 250
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	5 cut(s)	130, 151, 174, 212, 225
FokI	GGATG	1 cut(s)	77
HapII	CCGG	1 cut(s)	11
Hin1II	CATG	5 cut(s)	134, 155, 178, 216, 229
HinfI	GANTC	3 cut(s)	55, 163, 209
HpaII	CCGG	1 cut(s)	11
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188III	TCNNGA	3 cut(s)	85, 145, 244
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	108, 110
HpyCH4V	TGCA	3 cut(s)	29, 125, 216
Hsp92II	CATG	5 cut(s)	134, 155, 178, 216, 229
LguI	GCTCTTC	1 cut(s)	48
LpnPI	CCDG	6 cut(s)	24, 33, 39, 44, 60, 158
LweI	GCATC	2 cut(s)	16, 55
MboII	GAAGA	2 cut(s)	35, 172
MfeI	CAATTG	1 cut(s)	109
MluCI	AATT	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	1 cut(s)	188
MseI	TTAA	2 cut(s)	231, 237
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	12, 48
MssI	GTTTAAAC	1 cut(s)	232
MunI	CAATTG	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	48
NciI	CCSGG	1 cut(s)	12
NlaIII	CATG	5 cut(s)	134, 155, 178, 216, 229
NspI	RCATGY	2 cut(s)	134, 229
PciI	ACATGT	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	55, 163
PfoI	TCCNGGA	1 cut(s)	46
PleI	GAGTC	1 cut(s)	203
PmeI	GTTTAAAC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	203
PscI	ACATGT	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	95
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	231, 237
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	12, 48
SetI	ASST	3 cut(s)	43, 63, 100
SfaNI	GCATC	2 cut(s)	16, 55
SinI	GGWCC	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	189
Sse9I	AATT	1 cut(s)	109
StyD4I	CCNGG	2 cut(s)	10, 46
TaqI	TCGA	1 cut(s)	84
TasI	AATT	1 cut(s)	109
TatI	WGTACW	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	55, 163
Tru1I	TTAA	2 cut(s)	231, 237
Tru9I	TTAA	2 cut(s)	231, 237
TspGWI	ACGGA	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	95
XceI	RCATGY	2 cut(s)	134, 229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.