RchiOBHm_Chr0c16g0499901

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0024715
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 600 bp
ATGTTATTCAAGGATATGCCTATGAATGGTTTAAAGCAAGTCAAAAGTCTAAATAGAGTAAGGGCCGCCGCAGATGGCCAGGGGATACCAGCGCGGTCCACCTCAGTTTCCAGGCCCTCCACCAATGCAGTTTGCTCAGAGACCAATGGGGCCTCCTGGCCAGGTGATGAGGGGTCCACCGCCTCCGCCGCGGCCTGGAATGCAAGGTCCACCGCCTCGTCCTGGGATGCCTCCTCCACCTGGTGGTGTTCCTTTGTATGGACAGCCTCGTGGCATGCCGCCTCCACCCAACTCTCAGAACCAGCAACAAAATCAGCAGCAACAGTGATTTGGCATAAACAGGTTATGATCGGAGGGTTTCCAAGTGTTCTGCAAGCTGAAGCCTGGGGCTTGTTTTATGAGATGAAGCTTGCCTTGGACCTATCAATCACGCATTTGGAAATTGAATCTGATTCTGCTGTTTTGGTGAACCTTCTCAAGCAAGATGACATTGATTATCACCCTTTGGGAATCATCTTGATTAATTGCAAACATTTTCTGCAATATTTCAATTACTCTCAAGTCCAACATGTTCATAGAGAAAGAAATATGGCATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

21.93

Weight (kDa)

6.36

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 108 - 197 5.1e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024715)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c16g0499901
rosa_samantha Rh6BG302300 Rh6DG293300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 243
AccII CGCG 2 cut(s) 94, 191
AciI CCGC 9 cut(s) 66, 69, 94, 180, 186, 189, 191, 213, 279
AcoI YGGCCR 2 cut(s) 76, 158
AcuI CTGAAG 1 cut(s) 399
AdeI CACNNNGTG 1 cut(s) 243
AfiI CCNNNNNNNGG 6 cut(s) 26, 195, 222, 240, 243, 258
AflIII ACRYGT 1 cut(s) 568
AgsI TTSAA 3 cut(s) 10, 446, 550
AjnI CCWGG 8 cut(s) 78, 110, 155, 160, 194, 221, 239, 383
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AluBI AGCT 2 cut(s) 377, 409
AluI AGCT 2 cut(s) 377, 409
Alw26I GTCTC 1 cut(s) 134
AoxI GGCC 6 cut(s) 63, 76, 113, 150, 158, 192
ApeKI GCWGC 1 cut(s) 317
AseI ATTAAT 1 cut(s) 522
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 7 cut(s) 63, 96, 114, 150, 174, 207, 418
AsuHPI GGTGA 3 cut(s) 176, 478, 491
AvaII GGWCC 4 cut(s) 96, 174, 207, 418
BalI TGGCCA 2 cut(s) 78, 160
BauI CACGAG 1 cut(s) 268
BbvI GCAGC 1 cut(s) 329
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 8 cut(s) 80, 112, 157, 162, 196, 223, 241, 385
BciVI GTATCC 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 134
BfuI GTATCC 1 cut(s) 78
BisI GCNGC 6 cut(s) 66, 69, 189, 192, 279, 318
BlsI GCNGC 6 cut(s) 67, 70, 190, 193, 280, 319
Bme1390I CCNGG 8 cut(s) 80, 112, 157, 162, 196, 223, 241, 385
Bme18I GGWCC 4 cut(s) 96, 174, 207, 418
BmgT120I GGNCC 7 cut(s) 63, 96, 114, 150, 174, 207, 418
BmiI GGNNCC 2 cut(s) 151, 175
BmrFI CCNGG 8 cut(s) 80, 112, 157, 162, 196, 223, 241, 385
BmsI GCATC 1 cut(s) 217
BpuEI CTTGAG 2 cut(s) 461, 543
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 5 cut(s) 79, 189, 222, 384, 414
Bsc4I CCNNNNNNNGG 6 cut(s) 26, 195, 222, 240, 243, 258
BseBI CCWGG 8 cut(s) 80, 112, 157, 162, 196, 223, 241, 385
BseDI CCNNGG 5 cut(s) 79, 189, 222, 384, 414
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 6 cut(s) 26, 195, 222, 240, 243, 258
BseMII CTCAG 3 cut(s) 117, 150, 309
BseRI GAGGAG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 329
Bsh1236I CGCG 2 cut(s) 94, 191
BshFI GGCC 6 cut(s) 65, 78, 115, 152, 160, 194
BslI CCNNNNNNNGG 6 cut(s) 26, 195, 222, 240, 243, 258
BsmAI GTCTC 1 cut(s) 134
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 6 cut(s) 65, 78, 115, 152, 160, 194
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 348
BspACI CCGC 9 cut(s) 66, 69, 94, 180, 186, 189, 191, 213, 279
BspANI GGCC 6 cut(s) 65, 78, 115, 152, 160, 194
BspCNI CTCAG 3 cut(s) 116, 149, 308
BspFNI CGCG 2 cut(s) 94, 191
BspLI GGNNCC 2 cut(s) 151, 175
BspTNI GGTCTC 1 cut(s) 134
BssECI CCNNGG 5 cut(s) 79, 189, 222, 384, 414
BssMI GATC 1 cut(s) 348
BssSI CACGAG 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 414
Bst2BI CACGAG 1 cut(s) 268
Bst2UI CCWGG 8 cut(s) 80, 112, 157, 162, 196, 223, 241, 385
Bst4CI ACNGT 1 cut(s) 325
BstC8I GCNNGC 4 cut(s) 276, 375, 411, 595
BstDEI CTNAG 3 cut(s) 103, 136, 295
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 232
BstFNI CGCG 2 cut(s) 94, 191
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 1 cut(s) 351
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 1 cut(s) 348
BstMWI GCNNNNNNNGC 2 cut(s) 188, 200
BstNI CCWGG 8 cut(s) 80, 112, 157, 162, 196, 223, 241, 385
BstNSI RCATGY 3 cut(s) 278, 572, 597
BstSCI CCNGG 8 cut(s) 78, 110, 155, 160, 194, 221, 239, 383
BstUI CGCG 2 cut(s) 94, 191
BstV1I GCAGC 1 cut(s) 329
BsuI GTATCC 1 cut(s) 78
BsuRI GGCC 6 cut(s) 65, 78, 115, 152, 160, 194
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 4 cut(s) 276, 375, 411, 595
CfoI GCGC 1 cut(s) 94
Cfr13I GGNCC 7 cut(s) 63, 96, 114, 150, 174, 207, 418
Cfr42I CCGCGG 1 cut(s) 192
CsiI ACCWGGT 1 cut(s) 239
CviAII CATG 3 cut(s) 275, 569, 594
DdeI CTNAG 3 cut(s) 103, 136, 295
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
DraI TTTAAA 1 cut(s) 33
DraIII CACNNNGTG 1 cut(s) 243
EaeI YGGCCR 2 cut(s) 76, 158
EciI GGCGGA 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 414
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 4 cut(s) 96, 174, 207, 418
Eco57I CTGAAG 1 cut(s) 399
EcoO109I RGGNCCY 2 cut(s) 114, 150
EcoRII CCWGG 8 cut(s) 78, 110, 155, 160, 194, 221, 239, 383
EcoT14I CCWWGG 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 3 cut(s) 278, 572, 597
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FatI CATG 3 cut(s) 274, 568, 593
Fnu4HI GCNGC 6 cut(s) 66, 69, 189, 192, 279, 318
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 6 cut(s) 66, 69, 189, 192, 279, 318
GlaI GCGC 1 cut(s) 93
GluI GCNGC 6 cut(s) 66, 69, 189, 192, 279, 318
HaeIII GGCC 6 cut(s) 65, 78, 115, 152, 160, 194
HhaI GCGC 1 cut(s) 94
Hin1II CATG 3 cut(s) 278, 572, 597
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 3 cut(s) 446, 452, 510
HphI GGTGA 3 cut(s) 176, 478, 491
Hpy166II GTNNAC 4 cut(s) 99, 177, 210, 469
Hpy188I TCNGA 4 cut(s) 139, 298, 353, 451
Hpy188III TCNNGA 1 cut(s) 517
Hpy8I GTNNAC 4 cut(s) 99, 177, 210, 469
HpyAV CCTTC 1 cut(s) 482
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4V TGCA 5 cut(s) 128, 203, 373, 528, 541
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 200
HpyF3I CTNAG 3 cut(s) 103, 136, 295
Hsp92II CATG 3 cut(s) 278, 572, 597
HspAI GCGC 1 cut(s) 92
KspI CCGCGG 1 cut(s) 192
Kzo9I GATC 1 cut(s) 348
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 1 cut(s) 217
MabI ACCWGGT 1 cut(s) 239
MalI GATC 1 cut(s) 350
MboI GATC 1 cut(s) 348
MlsI TGGCCA 2 cut(s) 78, 160
MluCI AATT 3 cut(s) 441, 523, 550
MluNI TGGCCA 2 cut(s) 78, 160
MmeI TCCRAC 1 cut(s) 589
Mox20I TGGCCA 2 cut(s) 78, 160
MscI TGGCCA 2 cut(s) 78, 160
MseI TTAA 2 cut(s) 32, 522
Msp20I TGGCCA 2 cut(s) 78, 160
MspA1I CMGCKG 1 cut(s) 191
MspR9I CCNGG 8 cut(s) 80, 112, 157, 162, 196, 223, 241, 385
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 8 cut(s) 80, 112, 157, 162, 196, 223, 241, 385
MvnI CGCG 2 cut(s) 94, 191
MwoI GCNNNNNNNGC 2 cut(s) 188, 200
NdeII GATC 1 cut(s) 348
NlaIII CATG 3 cut(s) 278, 572, 597
NlaIV GGNNCC 2 cut(s) 151, 175
NspI RCATGY 3 cut(s) 278, 572, 597
PaeI GCATGC 2 cut(s) 278, 597
PciI ACATGT 1 cut(s) 568
PctI GAATGC 1 cut(s) 205
PfeI GAWTC 3 cut(s) 446, 452, 510
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 6 cut(s) 67, 70, 190, 193, 280, 319
PscI ACATGT 1 cut(s) 568
PshBI ATTAAT 1 cut(s) 522
Psp6I CCWGG 8 cut(s) 78, 110, 155, 160, 194, 221, 239, 383
PspGI CCWGG 8 cut(s) 78, 110, 155, 160, 194, 221, 239, 383
PspN4I GGNNCC 2 cut(s) 151, 175
PspPI GGNCC 7 cut(s) 63, 96, 114, 150, 174, 207, 418
SacII CCGCGG 1 cut(s) 192
SaqAI TTAA 2 cut(s) 32, 522
SatI GCNGC 6 cut(s) 66, 69, 189, 192, 279, 318
Sau3AI GATC 1 cut(s) 348
Sau96I GGNCC 7 cut(s) 63, 96, 114, 150, 174, 207, 418
ScrFI CCNGG 8 cut(s) 80, 112, 157, 162, 196, 223, 241, 385
SetI ASST 9 cut(s) 104, 166, 209, 242, 345, 379, 411, 423, 474
SexAI ACCWGGT 1 cut(s) 239
SfaNI GCATC 1 cut(s) 217
Sfr303I CCGCGG 1 cut(s) 192
SgrBI CCGCGG 1 cut(s) 192
SinI GGWCC 4 cut(s) 96, 174, 207, 418
SmlI CTYRAG 2 cut(s) 476, 558
SmoI CTYRAG 2 cut(s) 476, 558
SphI GCATGC 2 cut(s) 278, 597
Sse9I AATT 3 cut(s) 441, 523, 550
SsiI CCGC 9 cut(s) 66, 69, 94, 180, 186, 189, 191, 213, 279
SspI AATATT 1 cut(s) 545
StyD4I CCNGG 8 cut(s) 78, 110, 155, 160, 194, 221, 239, 383
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 1 cut(s) 325
TasI AATT 3 cut(s) 441, 523, 550
TauI GCSGC 5 cut(s) 68, 71, 191, 194, 281
TfiI GAWTC 3 cut(s) 446, 452, 510
Tru1I TTAA 2 cut(s) 32, 522
Tru9I TTAA 2 cut(s) 32, 522
TscAI CASTG 1 cut(s) 330
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 3 cut(s) 38, 419, 563
TspRI CASTG 1 cut(s) 330
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 4 cut(s) 96, 174, 207, 418
VspI ATTAAT 1 cut(s) 522
XceI RCATGY 3 cut(s) 278, 572, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.