Rh6DG293300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0024715
Physical Location & Seq
Reverse (-)
49286648 .. 49287022
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG293300.1

Sequence Viewer

Length: 375 bp
ATGCCTATGAATGGTTTAAAGCAAGTCAAAAGTCTAAATAGAGTAAGGGCCGCCGCAGATGGCCAGGGGATACCAGCGCGGTCCACCTCAGTTTCCAGGCCCTCCACCAATGCAGTTTGCTCAGAGACCAATGGGGCCTCCTGGCCAGGTGATGAGGGGTCCACCGCCTCCGCCGCGGCCTGGAATGCAAGGTCCACCGCCTCGTCCTGGGATGCCTCCTCCACCTGGTGGTGTTCCTTTGTATGGACAGCCTCGTGGCATGCCGCCTCCACCCAACTCTCAGAACCAGCAACAAAATCAGCAGCAACAGTGATTTGGCATAAACAGGTTATGATCGGAGGGTTTCCAAGTGGTGTTGAATGCCGGACATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.09

Weight (kDa)

9.06

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024715)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c16g0499901
rosa_samantha Rh6BG302300 Rh6DG293300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 228
AccII CGCG 2 cut(s) 79, 176
AciI CCGC 9 cut(s) 51, 54, 79, 165, 171, 174, 176, 198, 264
AcoI YGGCCR 2 cut(s) 61, 143
AdeI CACNNNGTG 1 cut(s) 228
AfiI CCNNNNNNNGG 6 cut(s) 11, 180, 207, 225, 228, 243
AgsI TTSAA 1 cut(s) 359
AjnI CCWGG 7 cut(s) 63, 95, 140, 145, 179, 206, 224
Alw26I GTCTC 1 cut(s) 119
AoxI GGCC 6 cut(s) 48, 61, 98, 135, 143, 177
ApeKI GCWGC 1 cut(s) 302
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 6 cut(s) 48, 81, 99, 135, 159, 192
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 3 cut(s) 81, 159, 192
BalI TGGCCA 2 cut(s) 63, 145
BauI CACGAG 1 cut(s) 253
BbvI GCAGC 1 cut(s) 314
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 7 cut(s) 65, 97, 142, 147, 181, 208, 226
BciVI GTATCC 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 119
BfuI GTATCC 1 cut(s) 63
BisI GCNGC 6 cut(s) 51, 54, 174, 177, 264, 303
BlsI GCNGC 6 cut(s) 52, 55, 175, 178, 265, 304
Bme1390I CCNGG 7 cut(s) 65, 97, 142, 147, 181, 208, 226
Bme18I GGWCC 3 cut(s) 81, 159, 192
BmgT120I GGNCC 6 cut(s) 48, 81, 99, 135, 159, 192
BmiI GGNNCC 2 cut(s) 136, 160
BmrFI CCNGG 7 cut(s) 65, 97, 142, 147, 181, 208, 226
BmsI GCATC 1 cut(s) 202
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 3 cut(s) 64, 174, 207
Bsc4I CCNNNNNNNGG 6 cut(s) 11, 180, 207, 225, 228, 243
BseBI CCWGG 7 cut(s) 65, 97, 142, 147, 181, 208, 226
BseDI CCNNGG 3 cut(s) 64, 174, 207
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 6 cut(s) 11, 180, 207, 225, 228, 243
BseMII CTCAG 3 cut(s) 102, 135, 294
BseRI GAGGAG 1 cut(s) 208
BseXI GCAGC 1 cut(s) 314
Bsh1236I CGCG 2 cut(s) 79, 176
BshFI GGCC 6 cut(s) 50, 63, 100, 137, 145, 179
BsiSI CCGG 1 cut(s) 364
BslI CCNNNNNNNGG 6 cut(s) 11, 180, 207, 225, 228, 243
BsmAI GTCTC 1 cut(s) 119
BsmI GAATGC 2 cut(s) 190, 365
BsnI GGCC 6 cut(s) 50, 63, 100, 137, 145, 179
Bso31I GGTCTC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 333
BspACI CCGC 9 cut(s) 51, 54, 79, 165, 171, 174, 176, 198, 264
BspANI GGCC 6 cut(s) 50, 63, 100, 137, 145, 179
BspCNI CTCAG 3 cut(s) 101, 134, 293
BspFNI CGCG 2 cut(s) 79, 176
BspLI GGNNCC 2 cut(s) 136, 160
BspTNI GGTCTC 1 cut(s) 119
BssECI CCNNGG 3 cut(s) 64, 174, 207
BssMI GATC 1 cut(s) 333
BssSI CACGAG 1 cut(s) 253
Bst2BI CACGAG 1 cut(s) 253
Bst2UI CCWGG 7 cut(s) 65, 97, 142, 147, 181, 208, 226
Bst4CI ACNGT 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 3 cut(s) 88, 121, 280
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 2 cut(s) 79, 176
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 1 cut(s) 336
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 333
BstMWI GCNNNNNNNGC 2 cut(s) 173, 185
BstNI CCWGG 7 cut(s) 65, 97, 142, 147, 181, 208, 226
BstNSI RCATGY 1 cut(s) 263
BstSCI CCNGG 7 cut(s) 63, 95, 140, 145, 179, 206, 224
BstUI CGCG 2 cut(s) 79, 176
BstV1I GCAGC 1 cut(s) 314
BsuI GTATCC 1 cut(s) 63
BsuRI GGCC 6 cut(s) 50, 63, 100, 137, 145, 179
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 261
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 6 cut(s) 48, 81, 99, 135, 159, 192
Cfr42I CCGCGG 1 cut(s) 177
CsiI ACCWGGT 1 cut(s) 224
CviAII CATG 1 cut(s) 260
CviJI RGCY 7 cut(s) 50, 63, 100, 137, 145, 179, 251
CviKI_1 RGCY 7 cut(s) 50, 63, 100, 137, 145, 179, 251
DdeI CTNAG 3 cut(s) 88, 121, 280
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
DraI TTTAAA 1 cut(s) 18
DraIII CACNNNGTG 1 cut(s) 228
EaeI YGGCCR 2 cut(s) 61, 143
EciI GGCGGA 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 119
Eco47I GGWCC 3 cut(s) 81, 159, 192
EcoO109I RGGNCCY 2 cut(s) 99, 135
EcoRII CCWGG 7 cut(s) 63, 95, 140, 145, 179, 206, 224
FaeI CATG 1 cut(s) 263
FaiI YATR 5 cut(s) 8, 244, 261, 321, 332
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 6 cut(s) 51, 54, 174, 177, 264, 303
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 6 cut(s) 51, 54, 174, 177, 264, 303
GlaI GCGC 1 cut(s) 78
GluI GCNGC 6 cut(s) 51, 54, 174, 177, 264, 303
HaeIII GGCC 6 cut(s) 50, 63, 100, 137, 145, 179
HapII CCGG 1 cut(s) 364
HhaI GCGC 1 cut(s) 79
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HpaII CCGG 1 cut(s) 364
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 3 cut(s) 84, 162, 195
Hpy188I TCNGA 3 cut(s) 124, 283, 338
Hpy8I GTNNAC 3 cut(s) 84, 162, 195
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 2 cut(s) 113, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 185
HpyF3I CTNAG 3 cut(s) 88, 121, 280
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 1 cut(s) 77
KspI CCGCGG 1 cut(s) 177
Kzo9I GATC 1 cut(s) 333
Lsp1109I GCAGC 1 cut(s) 314
LweI GCATC 1 cut(s) 202
MabI ACCWGGT 1 cut(s) 224
MalI GATC 1 cut(s) 335
MboI GATC 1 cut(s) 333
MlsI TGGCCA 2 cut(s) 63, 145
MluNI TGGCCA 2 cut(s) 63, 145
Mox20I TGGCCA 2 cut(s) 63, 145
MscI TGGCCA 2 cut(s) 63, 145
MseI TTAA 1 cut(s) 17
Msp20I TGGCCA 2 cut(s) 63, 145
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 1 cut(s) 364
MspR9I CCNGG 7 cut(s) 65, 97, 142, 147, 181, 208, 226
Mva1269I GAATGC 2 cut(s) 190, 365
MvaI CCWGG 7 cut(s) 65, 97, 142, 147, 181, 208, 226
MvnI CGCG 2 cut(s) 79, 176
MwoI GCNNNNNNNGC 2 cut(s) 173, 185
NdeII GATC 1 cut(s) 333
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 2 cut(s) 136, 160
NspI RCATGY 1 cut(s) 263
PaeI GCATGC 1 cut(s) 263
PctI GAATGC 2 cut(s) 190, 365
PflMI CCANNNNNTGG 1 cut(s) 228
PkrI GCNGC 6 cut(s) 52, 55, 175, 178, 265, 304
Psp6I CCWGG 7 cut(s) 63, 95, 140, 145, 179, 206, 224
PspGI CCWGG 7 cut(s) 63, 95, 140, 145, 179, 206, 224
PspN4I GGNNCC 2 cut(s) 136, 160
PspPI GGNCC 6 cut(s) 48, 81, 99, 135, 159, 192
SacII CCGCGG 1 cut(s) 177
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 6 cut(s) 51, 54, 174, 177, 264, 303
Sau3AI GATC 1 cut(s) 333
Sau96I GGNCC 6 cut(s) 48, 81, 99, 135, 159, 192
ScrFI CCNGG 7 cut(s) 65, 97, 142, 147, 181, 208, 226
SetI ASST 5 cut(s) 89, 151, 194, 227, 330
SexAI ACCWGGT 1 cut(s) 224
SfaNI GCATC 1 cut(s) 202
Sfr303I CCGCGG 1 cut(s) 177
SgrBI CCGCGG 1 cut(s) 177
SinI GGWCC 3 cut(s) 81, 159, 192
SphI GCATGC 1 cut(s) 263
SsiI CCGC 9 cut(s) 51, 54, 79, 165, 171, 174, 176, 198, 264
StyD4I CCNGG 7 cut(s) 63, 95, 140, 145, 179, 206, 224
TaaI ACNGT 1 cut(s) 310
TauI GCSGC 5 cut(s) 53, 56, 176, 179, 266
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 1 cut(s) 315
TseI GCWGC 1 cut(s) 302
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 1 cut(s) 315
Van91I CCANNNNNTGG 1 cut(s) 228
VpaK11BI GGWCC 3 cut(s) 81, 159, 192
XceI RCATGY 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.