RCHIOBHM_CPG0502051

This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Pt
Physical Location & Seq
Forward (+)
47191 .. 47647
457 bp
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UTR
Exon/CDS
Intron
PRQ15693

Sequence Viewer

Length: 252 bp
ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATTACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCCCTATTTATTGCGGGTTGGTTATTCGTCAGCACTGGTTTAGCTTACGATGTATTTGGAAGCCCTCGTCCAAACGAGTATTTTACAGAAAGCCGACAGGGAATTCCCTTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGATCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

9.39

Weight (kDa)

4.83

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B559 PF00283 6 - 34 1.6e-15 Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits
Cytochrom_B559a PF00284 42 - 79 1.8e-20 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0023953)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00580
rosa_chinensis RchiOBHm_CPg0502051
rosa_roxburghii Rroxscaffold_2G00119050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 98
AclI AACGTT 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 2 cut(s) 186, 233
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AoxI GGCC 1 cut(s) 202
ApoI RAATTY 2 cut(s) 186, 233
BceAI ACGGC 1 cut(s) 189
BglII AGATCT 1 cut(s) 242
BmrI ACTGGG 1 cut(s) 67
BmuI ACTGGG 1 cut(s) 67
Bse1I ACTGG 4 cut(s) 45, 62, 124, 205
BseNI ACTGG 4 cut(s) 45, 62, 124, 205
BshFI GGCC 1 cut(s) 204
BsnI GGCC 1 cut(s) 204
Bsp143I GATC 1 cut(s) 242
BspACI CCGC 1 cut(s) 98
BspANI GGCC 1 cut(s) 204
BsrI ACTGG 4 cut(s) 45, 62, 124, 205
BssMI GATC 1 cut(s) 242
BstKTI GATC 1 cut(s) 245
BstMBI GATC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BsuRI GGCC 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 117
CviJI RGCY 4 cut(s) 128, 147, 177, 204
CviKI_1 RGCY 4 cut(s) 128, 147, 177, 204
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
EaeI YGGCCR 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 186
FaiI YATR 2 cut(s) 69, 80
FauI CCCGC 1 cut(s) 91
HaeIII GGCC 1 cut(s) 204
HinfI GANTC 1 cut(s) 212
Hpy188III TCNNGA 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 93
HpyCH4IV ACGT 1 cut(s) 22
HpySE526I ACGT 1 cut(s) 22
Kzo9I GATC 1 cut(s) 242
LpnPI CCDG 5 cut(s) 43, 58, 105, 167, 186
MaeII ACGT 1 cut(s) 22
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MflI RGATCY 1 cut(s) 242
MluCI AATT 2 cut(s) 186, 233
MnlI CCTC 1 cut(s) 159
MseI TTAA 1 cut(s) 194
NdeII GATC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 212
Psp1406I AACGTT 1 cut(s) 22
PsuI RGATCY 1 cut(s) 242
SaqAI TTAA 1 cut(s) 194
Sau3AI GATC 1 cut(s) 242
SetI ASST 3 cut(s) 25, 85, 130
Sse9I AATT 2 cut(s) 186, 233
SsiI CCGC 1 cut(s) 98
TaiI ACGT 1 cut(s) 25
TaqI TCGA 2 cut(s) 52, 228
TasI AATT 2 cut(s) 186, 233
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 56, 246
TspRI CASTG 1 cut(s) 124
XapI RAATTY 2 cut(s) 186, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.