RchiOBHm_Chr1g0322271

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0024730
Physical Location & Seq
Reverse (-)
9686144 .. 9687018
875 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55229

Sequence Viewer

Length: 246 bp
ATGGATATAAACAAAGAAACCAAGGAGCATGCTTCATCAGACTCCCTTTTACAATGGGGACAATGGCAACTGCTTGATTCTATCCTCCCAACCGGTGGTTTTGCTCATTCCTTTGGTCTTGAGGCTGCAATCCAAGCTCGGATGGTCTCGGGTCCTGAAGATCTCCAAACTTTCGTAATTCATCTGTTAGAGAAATACTGCAAGCTTAATCCTTCCTTTTGTGTATTCTACAACAATATCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreF

Protein Analysis

81

Amino Acids

9.15

Weight (kDa)

5.07

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024730)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0322271 RchiOBHm_Chr1g0322461 RchiOBHm_Chr1g0322591

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 95
AgeI ACCGGT 1 cut(s) 92
AluBI AGCT 2 cut(s) 137, 205
AluI AGCT 2 cut(s) 137, 205
Alw26I GTCTC 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 125
AsiGI ACCGGT 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 148
AvaII GGWCC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 151
BglII AGATCT 1 cut(s) 160
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 112
BshTI ACCGGT 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 148
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 72
Bso31I GGTCTC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 148
Bsp143I GATC 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 153
BspTNI GGTCTC 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 21
BstC8I GCNNGC 2 cut(s) 30, 203
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 30, 203
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 152
CspAI ACCGGT 1 cut(s) 92
CviAII CATG 1 cut(s) 29
CviJI RGCY 3 cut(s) 125, 137, 205
CviKI_1 RGCY 3 cut(s) 125, 137, 205
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 32
FaiI YATR 2 cut(s) 8, 30
FaqI GGGAC 1 cut(s) 72
FatI CATG 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
HapII CCGG 1 cut(s) 93
Hin1II CATG 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 2 cut(s) 41, 77
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 2 cut(s) 40, 141
Hpy188III TCNNGA 2 cut(s) 119, 155
HpyAV CCTTC 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 128, 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
Hsp92II CATG 1 cut(s) 32
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 2 cut(s) 106, 168
Lsp1109I GCAGC 1 cut(s) 112
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 170
MflI RGATCY 1 cut(s) 160
MluCI AATT 1 cut(s) 177
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 2 cut(s) 95, 115
MseI TTAA 1 cut(s) 207
MspI CCGG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 1 cut(s) 160
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 153
NspI RCATGY 1 cut(s) 32
PaeI GCATGC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PpuMI RGGWCCY 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 152
PspPPI RGGWCCY 1 cut(s) 152
PsuI RGATCY 1 cut(s) 160
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 1 cut(s) 35
SetI ASST 3 cut(s) 139, 207, 245
SinI GGWCC 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SphI GCATGC 1 cut(s) 32
Sse9I AATT 1 cut(s) 177
StyI CCWWGG 1 cut(s) 21
TasI AATT 1 cut(s) 177
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 24, 170
Van91I CCANNNNNTGG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 152
XceI RCATGY 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.